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PDBsum entry 3v7e
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Pore analysis for: 3v7e calculated with  MOLE 2.0
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PDB id
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3v7e
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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9 pores,
coloured by radius |
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11 pores,
coloured by radius
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11 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.79 |
2.79 |
44.0 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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G 22 C G 23 C A 24 C C 25 C A 38 C C 39 C C 40 C
C 41 C G 87 C G 88 C U 89 C G 90 C C 91 C U 120 C
NCO 908 C G 219 D A 220 D G 221 D G 222 D G 223 D
A 224 D C 225 D A 317 D G 318 D A 319 D
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2 |
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3.08 |
3.08 |
53.1 |
-0.51 |
-0.79 |
4.6 |
100 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
G 19 C A 20 C G 21 C G 22 C C 25 C MG 920 C G 223
D A 224 D C 225 D A 238 D C 239 D C 240 D C 241 D
C 250 D U 251 D U 286 D G 287 D G 288 D U 289 D G
290 D A 317 D G 318 D A 319 D U 320 D
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3 |
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1.88 |
1.88 |
67.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 2 C C 3 C U 4 C U 5 C C 8 C A 9 C A 24 C C 25 C
U 95 C U 96 C C 98 C U 99 C A 109 C C 110 C G 111
C U 112 C U 113 C G 114 C A 115 C A 116 C A 117 C
G 118 C A 119 C NCO 901 C NCO 906 C MG 915 C MG
916 C MG 923 C MG 925 C MG 926 C C 225 D U 226 D
A 317 D G 318 D
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4 |
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2.58 |
2.58 |
75.6 |
-0.47 |
-0.60 |
7.9 |
94 |
3 |
0 |
3 |
3 |
0 |
0 |
0 |
U 17 C G 18 C G 19 C C 39 C C 40 C C 41 C G 87 C
G 88 C U 217 D G 218 D G 219 D C 239 D C 240 D C
241 D C 250 D U 251 D U 286 D G 287 D G 288 D
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5 |
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1.95 |
1.95 |
84.6 |
-0.21 |
-0.70 |
3.2 |
105 |
0 |
0 |
1 |
3 |
0 |
0 |
0 |
G 1 C G 2 C C 3 C U 4 C U 5 C C 8 C A 9 C G 87 C
G 88 C U 89 C U 95 C U 96 C C 98 C U 99 C A 109 C
C 110 C G 111 C U 112 C U 113 C G 114 C A 115 C A
116 C A 117 C G 118 C A 119 C U 120 C G 121 C A
122 C A 126 C NCO 901 C NCO 906 C MG 915 C MG 916
C MG 923 C MG 925 C G 219 D A 220 D G 221 D
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6 |
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1.87 |
1.87 |
94.6 |
-0.48 |
-0.79 |
4.3 |
100 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
G 19 C A 20 C G 21 C G 22 C G 23 C A 24 C C 25 C
A 37 C A 38 C C 91 C U 95 C U 96 C C 97 C C 98 C
U 99 C G 100 C A 109 C C 110 C G 111 C U 112 C U
113 C G 114 C A 116 C G 118 C A 119 C U 120 C NCO
906 C NCO 907 C MG 915 C MG 916 C MG 920 C G 222
D G 223 D A 238 D C 239 D C 240 D C 241 D C 250 D
U 251 D U 286 D G 287 D G 288 D U 289 D G 290 D
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7 |
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2.03 |
2.03 |
124.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 41 C G 42 C G 43 C A 45 C A 46 C C 48 C A 49 C
C 50 C U 51 C A 52 C G 53 C U 54 C C 55 C U 56 C
A 57 C G 58 C C 59 C G 60 C U 61 C A 63 C G 70 C
C 71 C U 72 C G 73 C A 74 C C 75 C G 76 C C 77 C
U 78 C A 79 C G 80 C G 81 C U 83 C A 84 C G 85 C
U 86 C G 87 C G 88 C G 90 C NCO 903 C NCO 904 C
NCO 908 C NCO 909 C NCO 910 C NCO 911 C
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8 |
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1.31 |
2.29 |
129.2 |
0.47 |
-0.29 |
2.6 |
84 |
0 |
0 |
2 |
6 |
1 |
0 |
1 |
A 49 C C 50 C U 51 C A 52 C G 53 C U 54 C C 55 C
U 56 C A 57 C G 58 C C 59 C G 60 C U 61 C A 63 C
G 70 C C 71 C U 72 C G 73 C A 74 C C 75 C G 76 C
C 77 C U 78 C G 123 C NCO 903 C NCO 909 C
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9 |
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2.33 |
2.33 |
158.8 |
-0.43 |
-0.80 |
3.4 |
84 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
G 1 C G 2 C G 22 C G 23 C A 24 C C 25 C A 49 C C
50 C U 51 C A 52 C G 53 C U 54 C C 55 C U 56 C A
57 C G 58 C C 59 C G 60 C U 61 C A 63 C G 70 C C
71 C U 72 C G 73 C A 74 C C 75 C G 76 C C 77 C U
78 C G 88 C A 119 C U 120 C G 121 C A 122 C G 123
C A 126 C NCO 903 C NCO 909 C A 220 D G 221 D G
222 D G 223 D A 224 D C 225 D A 317 D G 318 D A
319 D
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10 |
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2.05 |
2.05 |
176.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 6 C U 7 C C 8 C A 9 C A 10 C A 46 C C 47 C C 48
C A 49 C C 50 C U 51 C A 52 C G 53 C U 54 C C 55
C U 56 C A 57 C G 58 C C 59 C G 60 C U 61 C A 63
C G 70 C C 71 C U 72 C G 73 C A 74 C C 75 C G 76
C C 77 C U 78 C A 79 C G 80 C G 81 C C 82 C U 83
C U 95 C U 96 C C 98 C U 99 C A 109 C C 110 C G
111 C U 112 C U 113 C G 114 C A 116 C NCO 903 C
NCO 906 C NCO 909 C NCO 910 C NCO 911 C MG 915 C
MG 916 C MG 925 C
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11 |
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2.01 |
2.01 |
199.2 |
-0.36 |
-0.75 |
3.8 |
93 |
1 |
0 |
3 |
2 |
0 |
0 |
0 |
G 1 C G 2 C G 19 C A 20 C G 21 C G 22 C G 23 C A
24 C A 37 C A 38 C A 49 C C 50 C U 51 C A 52 C G
53 C U 54 C C 55 C U 56 C A 57 C G 58 C C 59 C G
60 C U 61 C A 63 C G 70 C C 71 C U 72 C G 73 C A
74 C C 75 C G 76 C C 77 C U 78 C G 88 C A 119 C U
120 C G 121 C A 122 C G 123 C A 126 C NCO 903 C
NCO 909 C MG 920 C A 220 D G 221 D G 222 D G 223
D A 238 D C 239 D C 240 D C 241 D C 250 D U 251 D
U 286 D G 287 D G 288 D U 289 D G 290 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program