PDBsum entry 3v5e

Pore analysis for: 3v5e calculated with

MOLE 2.0

PDB id

3v5e

Pores calculated on whole structure

Pores calculated excluding ligands

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14 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.26

1.39

106.8

-2.13

-0.71

12.3

84

7

2

15

2

3

2

0

2

1.21

1.21

112.0

-0.57

-0.18

7.9

94

7

4

16

15

1

1

0

3

1.26

1.72

113.6

-0.45

-0.16

7.5

93

7

1

14

14

2

1

0

4

1.19

1.35

117.7

-2.28

-0.75

11.1

86

7

2

17

2

2

2

0

5

1.17

1.58

117.7

-0.93

-0.31

12.1

94

7

3

14

14

2

1

0

6

1.30

1.78

117.8

-1.48

-0.43

8.9

92

8

1

26

13

1

1

0

7

1.16

1.42

117.9

-2.28

-0.75

11.0

85

6

2

17

2

3

2

0

8

1.16

1.23

123.4

-1.03

-0.34

7.5

92

6

2

21

14

2

1

0

9

1.23

1.40

123.6

-1.04

-0.36

7.2

91

6

2

21

14

3

1

0

10

1.17

1.22

124.4

-2.17

-0.69

15.0

85

8

4

14

3

1

4

0

11

1.32

1.46

127.5

-1.57

-0.47

8.5

94

7

1

22

14

1

1

0

12

1.58

2.04

134.6

-0.99

-0.28

6.6

95

8

1

32

24

1

0

0

13

1.22

1.38

172.4

-2.59

-0.79

17.6

85

8

8

17

2

2

2

0

14

1.16

1.37

172.3

-2.57

-0.78

18.3

85

9

8

19

2

1

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.