 |
PDBsum entry 3v4x
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3v4x calculated with MOLE 2.0
|
PDB id
|
|
|
|
3v4x
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
6 pores,
coloured by radius |
 |
6 pores,
coloured by radius
|
6 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.73 |
3.41 |
42.7 |
-1.44 |
-0.62 |
22.6 |
90 |
 |
4 |
5 |
2 |
5 |
0 |
0 |
0 |
 |
|
 |
 |
2 |
 |
2.31 |
2.35 |
50.0 |
-0.70 |
-0.06 |
23.8 |
80 |
5 |
8 |
5 |
9 |
0 |
0 |
0 |
|
 |
3 |
 |
2.74 |
3.42 |
50.6 |
-1.48 |
-0.63 |
21.6 |
88 |
5 |
6 |
3 |
4 |
0 |
0 |
0 |
|
 |
4 |
 |
2.40 |
3.15 |
53.0 |
-1.21 |
-0.43 |
14.8 |
85 |
3 |
5 |
6 |
7 |
1 |
1 |
0 |
F24 500 B
|
 |
5 |
 |
1.18 |
2.29 |
120.0 |
-0.79 |
-0.23 |
10.8 |
84 |
4 |
11 |
3 |
11 |
4 |
6 |
0 |
|
 |
6 |
 |
1.27 |
1.44 |
43.9 |
-1.40 |
-0.02 |
22.6 |
86 |
7 |
2 |
6 |
8 |
0 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |