PDBsum entry 3v3l Go to PDB code:  Tunnel analysis for: 3v3l calculated with MOLE 2.0 PDB id 3v3l Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.75 1.75 19.5 -2.98 -0.44 33.2 79 8 0 0 0 1 0 0  V3L 1 A V3L 1 B 2 1.25 1.25 22.2 -3.24 -0.32 35.6 72 6 0 0 0 3 0 0  V3L 1 A V3L 1 B 3 1.74 1.74 25.0 -2.53 -0.33 30.6 74 8 0 0 2 1 0 0  V3L 1 A V3L 1 B 4 1.08 1.08 26.0 -3.23 -0.38 37.9 78 8 2 0 0 1 0 0  V3L 1 A 5 1.16 2.75 42.7 -1.93 -0.13 22.9 78 8 1 1 3 4 0 0  V3L 1 A V3L 1 B MSE 137 B 6 1.49 1.49 15.7 -1.71 -0.40 24.6 81 2 2 2 1 1 0 0   7 1.31 1.65 15.6 -0.32 -0.14 8.1 81 0 2 1 3 2 0 0  MSE 137 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.