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PDBsum entry 3v2d
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Tunnel analysis for: 3v2d calculated with  MOLE 2.0
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PDB id
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3v2d
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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0 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.22 |
1.31 |
165.8 |
-0.77 |
-0.65 |
7.9 |
77 |
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6 |
1 |
2 |
3 |
2 |
1 |
0 |
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U 525 A A 528 A G 530 A C 531 A A 532 A G 533 A G
556 A U 557 A G 558 A G 559 A C 560 A G 561 A U
562 A G 563 A G 2018 A A 2019 A A 2020 A C 2021 A
U 2022 A G 2023 A C 2036 A G 2037 A A 2042 A C
2043 A C 2044 A C 2045 A C 2617 A G 2618 A C 2619
A C 2622 A G 2623 A G 2624 A C 2635 A U 2636 A U
2682 A A 2721 A G 2722 A C 2774 A A 2775 A A 2776
A G 2777 A A 2778 A G 2819 A A 2820 A A 2821 A C
2827 A C 2828 A C 2829 A U 2836 A G 2837 A G 2843
A G 2844 A C 2874 A C 2875 A MG 3090 A MG 3369 A
MG 3371 A MG 3372 A MG 3397 A MG 3656 A MG 202 T
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2 |
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1.18 |
1.25 |
169.1 |
-0.76 |
-0.59 |
10.5 |
69 |
6 |
2 |
0 |
3 |
2 |
0 |
0 |
A 324 A G 325 A A 340 A G 341 A G 342 A G 442 A G
530 A C 531 A A 532 A G 533 A U 534 A C 535 A G
552 A G 553 A U 554 A U 555 A G 556 A U 557 A G
558 A G 559 A C 560 A G 561 A U 562 A G 563 A G
614 A i:B U 614 A i:A U 614 A U 1198 A U 1199 A C
1200 A C 1201 A C 1202 A G 1203 A A 1204 A A 1214
A G 1215 A C 1218 A G 1219 A A 1220 A G 1223 A G
1227 A G 1228 A G 1229 A C 1230 A G 1239 A U 1240
A A 1241 A G 2018 A A 2019 A A 2020 A C 2021 A C
2036 A G 2037 A MG 3372 A MG 3397 A MG 3405 A MG
3583 A MG 3713 A
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3 |
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1.18 |
1.25 |
176.0 |
-0.64 |
-0.74 |
5.7 |
72 |
3 |
1 |
1 |
1 |
2 |
0 |
0 |
U 525 A A 528 A G 530 A C 531 A A 532 A G 533 A G
556 A U 557 A G 558 A G 559 A C 560 A G 561 A U
562 A G 563 A G 745 A C 755 A C 756 A U 1267 A A
1268 A A 1269 A A 1272 A U 1273 A A 1274 A A 1618
A C 1657 A C 1658 A U 1659 A G 1661 A G 1678 A U
1679 A U 1680 A G 1681 A A 1760 A C 1761 A C 1990
A U 1991 A G 2003 A G 2004 A A 2005 A G 2018 A A
2019 A A 2020 A C 2021 A U 2022 A G 2023 A C 2036
A G 2037 A C 2044 A C 2045 A G 2046 A U 2047 A G
2048 A G 2049 A C 2612 A U 2613 A A 2614 A U 2615
A C 2616 A C 2617 A G 2618 A C 2619 A A 2712 A i:
A U 2712 A U 2716 A G 2717 A MG 3197 A MG 3369 A
MG 3371 A MG 3372 A MG 3397 A MG 3481 A MG 3596 A
MG 3642 A MG 3708 A
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4 |
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1.26 |
1.30 |
208.7 |
-0.67 |
-0.75 |
6.4 |
74 |
3 |
2 |
1 |
1 |
2 |
0 |
0 |
C 531 A A 532 A C 560 A G 561 A U 562 A G 563 A C
564 A G 975 A i:A C 975 A C 976 A G 977 A G 978 A
G 979 A A 980 A A 981 A C 982 A A 983 A G 1003 A
C 1004 A C 1008 A G 1025 A U 1026 A C 1135 A G
1136 A G 1835 A C 1836 A G 1899 A A 1900 A G 1903
A G 1904 A C 1905 A G 1968 A A 1969 A A 1970 A A
1971 A G 2018 A A 2019 A A 2020 A C 2021 A G 2027
A U 2028 A G 2038 A G 2251 A G 2252 A A 2439 A A
2451 A C 2452 A A 2453 A G 2454 A G 2455 A C 2456
A U 2457 A G 2458 A G 2490 A U 2492 A G 2494 A G
2495 A C 2496 A U 2585 A A 2590 A C 2591 A U 2593
A C 2594 A G 2595 A A 2600 A C 2601 A G 2603 A U
2604 A MG 3058 A MG 3104 A MG 3119 A MG 3234 A MG
3276 A MG 3280 A MG 3373 A MG 3416 A MG 3422 A MG
3445 A MG 3584 A MG 3652 A MG 3662 A MG 3665 A C
88 B MG 305 D
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5 |
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1.22 |
1.22 |
211.0 |
-0.77 |
-0.71 |
8.0 |
74 |
7 |
2 |
0 |
1 |
3 |
1 |
0 |
U 525 A A 528 A G 530 A C 531 A A 532 A G 533 A G
556 A U 557 A G 558 A G 559 A C 560 A G 561 A U
562 A G 563 A G 1630 A C 1708 A U 1709 A G 2018 A
A 2019 A A 2020 A C 2021 A U 2022 A G 2023 A C
2036 A G 2037 A A 2042 A C 2043 A C 2044 A C 2045
A C 2617 A G 2618 A C 2619 A C 2622 A G 2623 A G
2624 A C 2635 A U 2636 A C 2690 A C 2691 A C 2692
A A 2693 A G 2694 A C 2695 A U 2696 A G 2697 A U
2698 A C 2704 A A 2705 A G 2706 A G 2707 A G 2708
A C 2774 A A 2775 A A 2776 A G 2777 A A 2778 A G
2819 A A 2821 A C 2827 A C 2828 A C 2829 A U 2836
A G 2837 A G 2838 A G 2839 A C 2840 A C 2871 A G
2872 A A 2873 A C 2874 A C 2875 A G 2876 A MG
3105 A MG 3369 A MG 3371 A MG 3372 A MG 3397 A MG
3510 A MG 3579 A MG 3656 A MG 3703 A
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6 |
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1.22 |
1.43 |
221.3 |
-0.57 |
-0.76 |
5.3 |
67 |
2 |
1 |
0 |
1 |
2 |
0 |
0 |
U 525 A A 528 A G 530 A C 531 A A 532 A G 533 A G
556 A U 557 A G 558 A G 559 A C 560 A G 561 A U
562 A G 563 A G 745 A C 755 A U 1267 A A 1268 A A
1269 A A 1272 A U 1273 A A 1274 A A 1302 A G 1303
A C 1304 A C 1305 A C 1315 A G 1332 A G 1388 A G
1389 A U 1391 A A 1393 A U 1394 A U 1438 A A 1439
A G 1440 A G 1441 A G 1466 A C 1467 A C 1468 A G
1517 A G 1526 A G 1527 A G 1537 A C 1548 A C 1549
A C 1550 A C 1605 A G 1606 A A 1608 A A 1609 A A
1610 A A 1618 A G 1619 A A 1641 A G 1643 A C 1644
A C 1646 A C 1657 A C 1658 A U 1659 A G 2003 A G
2004 A A 2005 A G 2018 A A 2019 A A 2020 A C 2021
A U 2022 A G 2023 A C 2036 A G 2037 A C 2044 A C
2045 A G 2046 A U 2047 A G 2048 A G 2049 A C 2612
A U 2613 A A 2614 A U 2615 A C 2616 A C 2617 A G
2618 A C 2619 A MG 3197 A MG 3261 A MG 3369 A MG
3371 A MG 3372 A MG 3397 A MG 3481 A MG 3514 A MG
3596 A MG 3650 A MG 3651 A MG 3708 A
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7 |
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1.31 |
1.31 |
17.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 1713 A U 1720 A G 1721 A G 1740 A A 1741 A G
1742 A C 1743 A C 1744 A MG 3472 A MG 3559 A MG
3602 A MG 3614 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program