PDBsum entry 3v0d Go to PDB code:  Tunnel analysis for: 3v0d calculated with MOLE 2.0 PDB id 3v0d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.60 1.67 17.4 -0.16 -0.05 11.9 78 3 1 1 3 2 0 0   2 1.61 1.72 20.6 -0.11 -0.11 10.3 81 3 0 2 3 1 0 0   3 1.60 1.76 23.5 0.50 0.07 9.7 81 2 1 1 3 1 0 0   4 1.60 1.76 23.6 0.28 -0.03 10.2 83 2 1 2 4 1 0 0   5 1.34 1.37 15.7 -1.20 0.07 19.0 78 2 2 0 2 2 0 0   6 1.33 1.36 17.2 -1.14 0.12 15.7 78 2 2 0 2 2 0 0   7 1.34 1.36 19.1 -1.12 -0.13 17.4 78 1 3 0 2 2 0 0   8 1.15 1.34 15.5 -2.01 -0.29 26.6 76 2 1 1 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.