PDBsum entry 3upy Go to PDB code:  Tunnel analysis for: 3upy calculated with MOLE 2.0 PDB id 3upy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.19 70.3 -0.86 -0.30 17.8 80 4 7 2 10 1 4 1   2 1.18 1.16 72.5 -0.68 -0.18 18.0 78 6 8 2 12 2 4 1  MG 446 A FOM 447 A 3 1.20 1.20 72.7 -0.69 -0.17 17.2 78 6 6 1 11 2 4 1   4 1.14 1.14 85.4 -1.12 -0.37 15.2 83 2 7 5 10 2 4 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.