PDBsum entry 3ukk Go to PDB code:  Tunnel analysis for: 3ukk calculated with MOLE 2.0 PDB id 3ukk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.41 40.6 -0.84 -0.24 12.6 89 2 4 4 8 2 0 0   2 1.22 1.41 43.9 -0.49 -0.13 11.5 88 3 5 4 11 2 0 0   3 1.21 1.43 30.2 -0.95 -0.12 9.5 82 1 1 3 1 2 0 1   4 1.41 1.74 19.4 0.93 0.12 7.5 95 2 1 0 6 0 0 0   5 1.40 1.74 20.7 1.59 0.35 4.2 96 1 1 1 6 0 0 0   6 1.29 2.54 22.2 -0.77 -0.07 9.7 81 2 1 2 1 2 1 0   7 1.30 1.84 19.8 -2.63 -0.54 36.0 77 2 2 1 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.