PDBsum entry 3ujf Go to PDB code:  Tunnel analysis for: 3ujf calculated with MOLE 2.0 PDB id 3ujf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.55 1.72 28.4 -2.24 -0.70 23.9 89 7 3 5 1 0 0 0  PEP 503 B 2 1.40 1.65 31.7 -2.06 -0.72 22.7 89 5 7 4 2 0 0 0  PEP 503 B 3 1.38 1.55 34.9 -2.60 -0.67 29.0 91 7 3 6 1 0 0 0  PEP 503 B 4 1.36 1.54 38.3 -2.48 -0.73 27.7 90 5 7 5 2 0 0 0  PEP 503 B 5 1.21 1.64 16.3 -1.09 -0.33 26.1 81 2 3 1 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.