PDBsum entry 3u5m Go to PDB code:  Pore analysis for: 3u5m calculated with MOLE 2.0 PDB id 3u5m Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 5.02 5.33 32.1 -2.58 -0.49 31.2 74 5 4 2 4 1 0 0   2 3.97 4.83 38.1 -0.53 -0.33 14.3 88 2 6 5 7 0 1 2  CA 1088 F 3 4.36 5.49 43.6 -0.89 -0.29 19.5 89 3 4 4 7 0 2 1  CA 3 E 4 4.83 4.83 46.9 -2.05 -0.42 11.2 74 4 2 8 3 3 1 0   5 3.87 5.21 48.6 -1.02 -0.46 18.9 88 3 7 5 6 0 1 2  CA 1088 A CA 1088 F 6 4.83 4.82 50.1 -2.36 -0.31 20.7 77 5 4 8 6 2 0 0   7 3.69 4.83 50.6 -0.23 -0.16 12.6 86 2 4 4 9 0 3 2  CA 3 E 8 2.44 4.22 52.2 -1.98 -0.37 26.4 90 6 2 6 3 0 2 1   9 3.75 4.34 53.3 -1.45 -0.27 15.5 80 3 5 7 5 1 2 0   10 1.90 4.31 58.5 -1.82 -0.25 31.4 75 7 4 1 6 1 1 0   11 3.84 5.19 60.1 -0.36 -0.22 12.5 87 2 8 9 7 0 2 4   12 1.89 4.32 60.6 -1.59 -0.33 27.5 76 6 4 3 7 1 1 1   13 3.75 4.37 62.9 -1.13 -0.21 6.9 81 3 2 11 4 3 3 0   14 3.70 4.84 63.7 -0.21 -0.07 12.5 86 2 5 8 9 0 5 3   15 3.83 5.34 73.6 -1.57 -0.30 20.1 78 8 4 5 8 2 3 1   16 2.44 4.23 82.1 -1.98 -0.33 24.4 82 10 5 9 5 1 0 1   17 1.51 1.59 90.8 -1.52 -0.38 24.3 83 11 9 8 10 2 2 1  CA 1088 C 18 4.03 4.14 91.5 -0.19 -0.11 12.0 84 7 7 10 12 1 5 2   19 3.73 4.82 91.1 -0.90 -0.20 17.2 80 8 8 6 10 2 4 3  CA 1088 B 20 3.51 3.50 102.5 -0.96 -0.29 18.4 76 5 12 5 8 5 5 5  CA 1088 I 21 2.11 2.34 109.3 -0.59 -0.11 15.2 82 7 10 11 13 0 2 2   22 2.58 2.66 109.2 -0.71 -0.16 15.0 82 5 10 12 12 1 5 3  CA 1088 B 23 1.67 3.71 115.1 -1.37 -0.29 22.3 83 10 10 11 12 1 4 1  CA 1088 C 24 2.10 2.37 122.0 -0.79 -0.27 12.8 81 12 1 9 11 1 5 0   25 1.50 1.60 126.9 -1.84 -0.49 25.2 72 13 11 3 9 7 3 4  CA 1088 I 26 1.50 1.56 130.4 -1.27 -0.37 21.3 82 18 8 8 14 3 3 1  CA 1088 C 27 3.54 3.54 138.0 -0.96 -0.35 17.0 75 10 11 5 12 6 6 5  CA 1088 I 28 1.50 1.56 148.6 -1.65 -0.38 24.4 80 17 11 9 16 2 0 2  CA 1088 C 29 1.67 3.71 154.8 -1.12 -0.28 19.9 82 17 9 11 16 2 5 1  CA 1088 C 30 1.36 1.43 173.4 -1.51 -0.34 18.4 80 17 7 15 12 3 6 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.