PDBsum entry 3u2d Go to PDB code:  Tunnel analysis for: 3u2d calculated with MOLE 2.0 PDB id 3u2d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.48 16.6 0.16 0.20 18.5 77 0 2 0 4 2 0 0  MG 1 B 2 1.37 1.46 16.7 0.70 0.38 15.1 77 0 2 0 4 2 0 0  MG 1 B 3 1.57 1.71 20.3 -1.75 0.22 31.9 72 3 3 0 2 2 0 0   4 1.57 1.71 24.0 -2.83 -0.03 39.1 72 7 3 1 2 3 0 0   5 1.57 1.71 26.5 -1.54 0.06 23.6 75 5 1 1 3 2 0 0   6 1.57 1.71 26.6 -1.48 0.20 28.1 72 3 3 0 3 3 0 0  MG 1 B 7 1.57 1.71 32.5 -2.51 0.02 36.3 71 7 4 0 2 4 0 0   8 1.99 3.22 18.9 0.61 0.15 4.9 97 0 2 3 6 0 0 0  08B 1 A 9 1.36 1.36 20.0 0.24 -0.09 6.8 97 0 2 3 7 0 0 0  08B 1 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.