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PDBsum entry 3tyh

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Pore analysis for: 3tyh calculated with MOLE 2.0 PDB id
3tyh
Pores calculated on whole structure Pores calculated excluding ligands

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21 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.49 2.94 42.9 -1.33 -0.51 13.8 82 5 4 1 3 1 1 0  
2 2.98 3.36 43.8 -1.94 -0.17 28.3 79 8 1 3 3 1 2 0  
3 3.57 4.00 46.2 -2.48 -0.54 26.1 82 6 4 6 1 2 0 0  CU 310 F CU 311 F
4 3.24 3.60 48.0 -1.97 -0.43 23.3 82 7 5 4 1 2 0 0  CU 310 F CU 311 F
5 1.33 1.37 49.1 -1.02 -0.30 15.7 83 3 3 3 5 1 1 0  
6 2.87 3.05 59.7 -1.86 -0.56 21.3 87 7 4 4 3 0 0 0  
7 1.69 1.89 75.0 -1.85 -0.41 26.7 86 6 5 6 6 2 0 0  CU 310 B CU 311 B
8 1.38 2.42 77.8 -1.00 -0.41 11.2 83 5 3 5 5 2 2 0  
9 1.64 1.81 97.4 -1.95 -0.44 19.5 77 8 4 4 2 1 3 0  
10 2.46 2.48 103.9 -1.42 -0.34 24.0 89 9 5 4 8 1 1 0  CU 310 F CU 311 F
11 2.20 2.81 109.0 -1.40 -0.42 21.2 88 10 4 3 8 0 2 0  
12 1.78 1.93 151.8 -2.14 -0.47 24.9 81 14 7 5 4 1 3 0  
13 1.99 2.75 231.8 -1.87 -0.47 21.0 81 14 7 6 7 4 4 0  CU 310 A CU 311 A CU 310 I CU 311 I
14 1.41 1.50 54.1 -0.45 -0.39 7.3 85 2 0 3 3 0 3 0  
15 1.87 1.92 32.1 -1.15 -0.39 10.1 80 2 2 2 3 3 2 0  CU 310 H CU 311 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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