PDBsum entry 3ttc

Tunnel analysis for: 3ttc calculated with

MOLE 2.0

PDB id

3ttc

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.30

51.6

-0.47

-0.19

14.5

74

8

2

1

9

1

2

1

ADP 747 A

2

1.27

1.29

53.3

-1.13

-0.34

19.1

74

8

2

1

6

1

1

1

ADP 747 A

3

1.26

1.30

54.3

-0.75

-0.31

16.6

78

7

5

0

6

1

1

0

ADP 748 A

4

1.11

1.39

79.1

-0.70

-0.25

15.7

82

11

2

2

14

1

3

1

ADP 747 A

5

1.28

1.47

17.8

-0.22

-0.04

2.2

66

0

0

2

3

2

1

0

6

1.28

2.57

16.6

-0.13

0.76

8.1

67

1

0

3

4

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.