PDBsum entry 3tdd Go to PDB code:  Pore analysis for: 3tdd calculated with MOLE 2.0 PDB id 3tdd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.47 3.75 29.5 -1.81 -0.42 18.5 84 3 3 3 2 1 0 0   2 1.80 1.99 46.9 -1.27 -0.34 19.8 80 4 4 3 3 3 1 0   3 2.02 3.99 63.1 -2.83 -0.76 28.9 85 9 9 7 1 1 1 0   4 1.55 1.73 97.6 -2.83 -0.62 30.9 79 13 11 7 2 3 1 0   5 1.71 1.87 101.4 -2.73 -0.45 32.2 78 17 9 6 4 6 2 0   6 1.64 1.81 108.2 -2.43 -0.43 29.9 79 15 11 5 6 5 1 0   7 1.70 1.79 110.7 -2.14 -0.30 25.3 78 18 8 7 5 8 2 0   8 1.65 1.81 117.6 -2.21 -0.42 27.1 81 14 12 8 6 6 2 0   9 1.68 1.84 117.5 -1.91 -0.29 23.6 79 16 10 6 7 7 1 0   10 1.69 1.84 126.9 -1.72 -0.29 21.4 81 15 11 9 7 8 2 0   11 1.78 1.85 136.6 -1.94 -0.32 22.7 84 14 11 14 7 6 2 0   12 1.31 1.34 143.8 -2.26 -0.43 26.4 82 18 13 12 8 6 1 0   13 1.74 3.21 145.2 -2.46 -0.47 25.8 83 18 11 14 4 6 1 0   14 1.75 3.49 147.8 -2.69 -0.58 28.4 83 20 11 12 2 5 1 0   15 1.63 2.38 154.2 -2.16 -0.49 24.5 81 19 15 10 5 6 3 0   16 1.66 1.87 180.1 -2.82 -0.49 30.3 82 24 10 13 6 6 2 0   17 1.69 1.85 197.7 -2.44 -0.46 26.8 84 22 13 15 8 6 2 0   18 1.90 2.26 197.9 -2.77 -0.55 28.1 83 22 12 16 5 5 1 0   19 1.57 2.72 207.0 -2.38 -0.46 23.8 83 23 11 17 6 7 1 0   20 1.36 1.52 210.6 -2.70 -0.42 28.1 84 25 10 18 4 9 2 0   21 1.81 1.96 219.1 -2.59 -0.40 26.6 83 29 10 19 7 9 2 0   22 1.58 3.14 221.8 -2.29 -0.39 24.3 82 28 11 14 8 8 4 0   23 1.76 3.41 221.7 -2.80 -0.49 28.8 83 31 10 17 5 8 2 0   24 1.93 2.18 220.2 -2.90 -0.57 29.1 82 26 13 17 3 7 0 0   25 1.77 1.83 230.5 -2.43 -0.50 25.3 86 22 15 21 6 7 1 0   26 1.77 1.91 236.8 -2.60 -0.49 25.9 84 26 12 21 6 7 1 0   27 1.72 2.67 239.4 -2.00 -0.38 21.8 84 26 14 16 10 8 4 0   28 1.76 2.00 236.7 -2.27 -0.39 23.9 84 27 13 21 9 9 2 0   29 1.77 2.13 239.4 -2.43 -0.46 25.8 85 29 13 19 7 8 2 0   30 1.83 2.07 259.5 -2.77 -0.55 27.9 84 26 15 21 5 8 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.