PDBsum entry 3t5f Go to PDB code:  Tunnel analysis for: 3t5f calculated with MOLE 2.0 PDB id 3t5f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.14 20.4 -1.19 -0.60 15.2 68 2 3 0 0 4 1 0  NA 7 H 2 1.15 1.15 22.2 -1.59 -0.70 20.6 74 4 4 0 0 3 1 0  NA 7 H 3 1.20 1.20 23.2 -0.89 -0.53 13.2 64 1 4 0 0 3 0 1  M34 1 H 4 1.34 1.41 23.0 -0.04 0.10 10.2 81 3 1 1 7 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.