PDBsum entry 3t5d Go to PDB code:  Pore analysis for: 3t5d calculated with MOLE 2.0 PDB id 3t5d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 pore, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.21 35.2 -2.05 -0.76 22.6 93 5 5 4 0 0 0 0  GDP 1 A GDP 1 C 2 1.27 1.55 45.9 -1.21 -0.44 21.1 85 6 3 1 3 0 1 0   3 1.30 1.54 49.3 -1.29 -0.54 20.7 88 4 4 3 3 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.