PDBsum entry 3std Go to PDB code:  Tunnel analysis for: 3std calculated with MOLE 2.0 PDB id 3std Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.52 27.9 -0.10 -0.03 2.8 66 0 1 0 3 7 0 0   2 1.22 1.56 28.2 -0.18 0.04 2.8 63 0 1 0 2 7 0 0   3 1.23 1.53 32.5 -0.23 -0.06 3.6 68 0 1 0 4 7 0 0   4 1.64 1.87 22.0 1.64 0.69 1.8 71 0 1 1 3 4 1 0  MQ0 504 C 5 1.48 1.54 27.5 1.25 0.56 4.8 72 2 1 1 3 4 1 0  MQ0 505 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.