PDBsum entry 3ss6 Go to PDB code:  Tunnel analysis for: 3ss6 calculated with MOLE 2.0 PDB id 3ss6 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.25 41.5 -1.64 -0.71 14.0 90 5 4 4 1 0 1 0   2 1.26 1.26 42.1 -1.60 -0.71 13.2 89 4 4 4 1 0 2 0   3 1.38 1.70 17.5 -0.34 0.11 9.3 82 2 1 2 4 1 0 0   4 1.38 1.67 16.8 -0.27 0.07 9.8 82 2 1 2 4 1 0 0   5 1.39 1.71 20.8 -0.32 -0.16 10.8 88 2 1 3 5 1 1 0   6 1.25 3.51 24.3 -1.52 -0.31 22.2 83 5 2 3 2 1 0 0   7 1.24 3.40 31.8 -1.55 -0.39 21.2 81 4 4 3 2 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.