PDBsum entry 3spd Go to PDB code:  Pore analysis for: 3spd calculated with MOLE 2.0 PDB id 3spd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 1.57 28.9 -0.90 -0.48 14.8 86 1 2 1 2 0 1 0  DT 1 E DA 10 E DG 11 E DC 9 F DG 10 F DG 11 F DG 11 G DT 12 G DG 1 H 2 2.21 2.21 32.2 -1.73 -0.29 22.9 78 4 2 2 3 1 2 0   3 1.70 1.92 36.1 -1.37 -0.27 20.2 80 4 2 1 4 1 2 0   4 2.17 2.35 36.5 -1.80 -0.39 21.8 86 6 2 4 2 1 0 0  SO4 702 B DT 1 E DT 9 E DA 10 E DG 1 F DG 10 F DG 11 F 5 1.38 1.57 36.8 -0.77 -0.46 13.4 85 1 3 1 2 0 1 0  DT 12 G DG 13 G DA 14 G DG 1 H DT 2 H 6 1.14 1.95 37.2 -1.58 -0.25 19.1 85 6 1 2 1 1 2 0  SO4 702 A DT 1 E DA 2 E DT 3 E DT 4 E DC 5 E DT 14 F 7 1.40 1.77 42.0 -1.12 -0.22 15.9 83 4 2 2 4 1 1 0  SO4 701 C 8 2.25 2.39 43.2 -1.84 -0.44 22.9 86 6 3 4 2 1 0 0  SO4 702 D DT 1 E DA 10 E DG 11 E DC 9 F DG 10 F DG 11 F DG 11 G DT 12 G DG 1 H 9 2.26 2.40 49.1 -1.73 -0.44 22.8 83 7 3 3 2 1 0 0  SO4 702 D DT 12 G DG 13 G DA 14 G DG 1 H DT 2 H 10 2.24 2.62 52.1 -1.41 -0.71 15.3 87 3 2 1 0 0 0 0  DC 6 E DG 7 E DA 8 E DT 9 E DA 10 E DG 11 E DT 12 E DG 13 E DA 14 E DG 1 F DA 4 F DC 5 F DT 6 F DT 12 G DG 13 G 11 1.39 1.76 55.2 -1.55 -0.38 14.7 86 7 2 4 2 2 1 0  SO4 702 B SO4 701 C DT 1 E DT 9 E DA 10 E DG 1 F DG 10 F DG 11 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.