PDBsum entry 3s2d Go to PDB code:  Pore analysis for: 3s2d calculated with MOLE 2.0 PDB id 3s2d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   26 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.87 2.09 26.3 -1.09 -0.18 22.0 83 3 4 2 4 1 0 0   2 2.37 2.75 27.9 -2.94 -0.63 37.6 79 7 4 0 2 0 1 0   3 1.73 1.77 38.7 -1.07 -0.52 9.0 92 4 1 4 3 1 0 0  DG 10 R DA 18 T DT 19 T 4 2.26 2.24 49.7 -1.99 -0.42 27.4 79 12 4 0 5 1 1 0  DA 18 T 5 1.65 1.85 69.9 -1.76 -0.49 28.3 83 10 9 2 5 0 1 0   6 2.02 2.37 71.1 -1.83 -0.42 18.7 83 8 6 8 3 2 2 0   7 2.35 2.60 75.1 -1.80 -0.48 23.3 80 9 4 2 3 2 1 0  DA 6 R DA 18 T DA 27 T DT 28 T 8 1.35 1.35 79.2 -0.32 -0.10 11.4 87 7 2 6 12 1 2 0  DG 17 T DA 18 T 9 1.11 3.04 79.5 -1.95 -0.39 21.3 79 6 6 6 7 2 2 0   10 1.18 1.18 89.1 -1.57 -0.45 21.1 87 8 8 7 6 1 3 0   11 1.99 3.74 97.8 -2.08 -0.47 25.5 84 12 6 6 4 3 1 0  DA 27 T DT 28 T 12 1.80 3.82 101.6 -1.35 -0.08 22.7 78 10 8 9 11 6 1 0   13 1.69 3.29 102.0 -1.74 -0.55 23.1 85 11 12 13 4 1 2 0   14 1.72 1.72 103.6 -1.85 -0.58 18.4 84 11 5 7 2 3 1 0  DA 6 R DG 10 R DA 18 T DT 19 T DC 20 T DC 22 T DA 27 T DT 28 T 15 1.99 3.75 105.4 -1.83 -0.49 24.4 84 11 8 4 7 2 2 0  DA 6 R DA 18 T DA 27 T 16 1.35 1.38 121.0 -0.52 0.01 12.8 81 8 5 5 14 5 6 0   17 1.37 1.40 184.4 -0.87 -0.21 17.4 81 16 7 4 16 4 4 0  DC 16 T DA 18 T DA 27 T DT 28 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.