PDBsum entry 3rt4

Tunnel analysis for: 3rt4 calculated with

MOLE 2.0

PDB id

3rt4

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.15

1.37

22.3

-1.06

0.01

10.8

86

3

0

3

1

2

1

0

2

1.18

1.41

29.2

-0.28

-0.04

6.1

93

3

0

6

5

1

0

0

TLA 6748 C

3

1.19

1.42

35.0

-1.96

-0.24

14.7

77

4

1

3

2

2

3

0

LP5 501 C

4

1.16

1.38

35.4

-1.73

-0.21

9.5

74

3

0

4

0

3

3

0

LP5 501 C

5

1.17

1.39

43.8

-1.37

-0.19

7.9

78

4

1

5

0

3

2

0

LP5 501 C

6

1.20

1.43

59.2

-1.43

-0.11

12.3

79

5

2

5

2

4

4

0

LP5 501 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.