PDBsum entry 3rpl

Pore analysis for: 3rpl calculated with

MOLE 2.0

PDB id

3rpl

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

6 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.38

1.50

26.8

-0.26

-0.22

17.9

84

1

3

0

5

0

1

0

2

2.02

2.03

56.3

-1.58

-0.46

15.6

89

5

2

9

3

1

1

0

AMP 349 D

3

2.05

2.05

56.8

-1.62

-0.41

16.7

89

5

2

9

3

1

1

0

AMP 349 B

4

2.05

2.05

56.8

-1.46

-0.41

15.8

89

5

2

9

3

1

1

0

AMP 349 A CL 356 C

5

1.50

1.50

65.5

-1.86

-0.28

24.1

86

7

3

5

2

1

1

0

AMP 349 C

6

2.06

2.07

65.6

-1.68

-0.52

14.6

91

5

4

11

3

1

1

0

AMP 349 C

7

2.07

2.31

66.0

-1.23

-0.26

18.1

89

8

2

10

4

2

0

0

AMP 349 C AMP 349 D

8

1.50

1.51

68.0

-1.79

-0.50

17.3

89

6

4

7

2

1

1

0

AMP 349 C

9

1.46

1.46

68.5

-1.17

-0.19

19.5

87

9

2

6

3

2

0

0

AMP 349 C AMP 349 D

10

2.04

2.05

70.7

-2.28

-0.59

19.9

91

4

6

10

2

0

2

0

11

1.71

1.71

56.5

-1.98

-0.59

27.3

86

4

8

4

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.