PDBsum entry 3rd8 Go to PDB code:  Tunnel analysis for: 3rd8 calculated with MOLE 2.0 PDB id 3rd8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.28 16.7 1.75 0.46 8.5 74 2 2 0 6 0 0 0   2 1.26 1.28 19.2 2.63 0.79 6.5 75 1 2 0 7 0 0 0   3 1.29 1.55 16.1 -0.94 -0.16 19.3 74 2 2 2 2 1 1 0   4 1.13 1.51 17.7 1.25 0.21 3.1 81 0 1 2 3 1 0 0   5 1.31 1.41 18.5 -1.26 -0.33 20.9 77 1 2 2 2 1 1 0   6 1.29 1.46 21.4 -1.38 -0.30 21.0 75 1 2 3 2 1 1 0   7 1.30 1.36 17.5 -1.97 -0.61 28.0 80 3 4 0 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.