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PDBsum entry 3r8s
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Tunnel analysis for: 3r8s calculated with  MOLE 2.0
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PDB id
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3r8s
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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12 tunnels,
coloured by tunnel radius |
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11 tunnels,
coloured by
tunnel radius
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11 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.52 |
1.52 |
17.1 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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G 2110 A G 2116 A A 2117 A U 2118 A A 2119 A G
2136 A U 2149 A C 2161 A U 2172 A
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2 |
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1.41 |
1.41 |
17.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 2109 A G 2110 A U 2118 A C 2143 A G 2144 A C
2145 A G 2148 A U 2149 A U 2172 A U 2181 A
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3 |
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1.62 |
1.62 |
28.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 2110 A U 2118 A A 2119 A G 2120 A G 2121 A U
2122 A G 2123 A G 2124 A G 2125 A U 2149 A A 2169
A A 2170 A A 2171 A U 2172 A
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4 |
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1.57 |
1.57 |
32.9 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 2106 A G 2107 A A 2108 A U 2109 A G 2110 A U
2118 A A 2119 A G 2120 A U 2172 A C 2175 A A 2176
A
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5 |
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1.65 |
1.65 |
34.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 2107 A G 2110 A U 2118 A A 2119 A C 2129 A U
2130 A A 2135 A G 2136 A U 2149 A C 2150 A U 2151
A C 2160 A U 2172 A A 2173 A C 2174 A C 2175 A
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6 |
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1.55 |
1.55 |
35.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 2105 A U 2106 A G 2107 A A 2108 A U 2109 A G
2110 A U 2118 A A 2119 A G 2120 A U 2172 A C 2175
A A 2176 A C 2177 A C 2178 A
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7 |
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1.48 |
1.48 |
41.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 2104 A U 2105 A U 2106 A G 2107 A A 2108 A U
2109 A G 2110 A U 2118 A A 2119 A G 2120 A U 2172
A C 2175 A A 2176 A C 2178 A C 2179 A
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8 |
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1.56 |
1.61 |
15.2 |
0.77 |
0.17 |
13.2 |
89 |
1 |
2 |
0 |
7 |
1 |
0 |
0 |
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9 |
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1.54 |
2.05 |
20.0 |
2.76 |
0.75 |
3.1 |
90 |
1 |
0 |
0 |
11 |
1 |
0 |
0 |
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10 |
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1.20 |
1.43 |
22.1 |
3.33 |
0.90 |
1.4 |
81 |
1 |
0 |
0 |
11 |
0 |
0 |
0 |
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11 |
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1.26 |
1.67 |
17.9 |
0.98 |
0.25 |
8.7 |
83 |
1 |
2 |
1 |
5 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program