PDBsum entry 3r1l Go to PDB code:  Tunnel analysis for: 3r1l calculated with MOLE 2.0 PDB id 3r1l Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.48 32.6 -0.17 -0.16 12.8 70 3 0 0 3 1 0 0  A 56 F C 1013 F C 1014 F 2 1.25 1.30 36.5 -0.88 -0.32 17.6 74 4 1 1 3 1 0 0  C 1003 F A 1005 F U 1006 F 3 1.21 1.48 102.8 -0.44 -0.61 7.4 69 2 0 0 3 1 0 0  U 34 F C 35 F U 36 F C 38 F G 44 F G 46 F U 48 F U 49 F G 50 F A 51 F G 52 F A 53 F A 54 F C 55 F A 56 F U 57 F A 67 F U 68 F G 69 F C 70 F G 72 F A 73 F G 74 F G 75 F U 76 F G 77 F G 78 F C 79 F U 106 F U 107 F C 108 F C 1002 F C 1003 F G 1016 F G 1017 F U 1018 F MG 1023 F MG 1025 F MG 1026 F MG 1032 F MG 1035 F 4 1.19 1.42 27.6 -1.14 -0.33 19.0 65 3 1 0 2 2 0 0  C 1003 C A 1005 C U 1006 C G 1015 C 5 1.18 1.42 35.4 -1.07 -0.42 16.3 63 3 0 0 2 2 0 0  C 55 C A 56 C C 1013 C C 1014 C G 1015 C MG 1038 C 6 1.18 1.43 43.5 -0.99 -0.44 15.1 62 2 0 0 2 2 0 0  A 53 C A 54 C C 55 C A 56 C C 1002 C C 1003 C G 1015 C G 1016 C G 1017 C U 1018 C MG 1028 C MG 1038 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.