 |
PDBsum entry 3r1h
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3r1h calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3r1h
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
15 pores,
coloured by radius |
|
18 pores,
coloured by radius
|
18 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.05 |
3.05 |
34.1 |
-1.31 |
-0.72 |
14.5 |
78 |
|
3 |
1 |
0 |
0 |
0 |
0 |
0 |
|
G 50 C A 51 C G 52 C A 53 C A 54 C C 55 C A 56 C
U 57 C A 67 C U 68 C G 69 C C 1003 C C 1004 C A
1005 C U 1006 C G 1015 C G 1016 C G 1017 C U 1018
C CA 1025 C CA 1026 C
|
 |
|
2 |
 |
3.70 |
3.70 |
36.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 4 C A 42 C A 43 C G 45 C G 46 C A 73 C G 74 C G
75 C G 78 C C 79 C A 80 C G 81 C C 82 C G 105 C U
107 C C 108 C U 109 C C 110 C A 111 C A 114 C CA
1027 C
|
|
3 |
 |
2.26 |
2.26 |
36.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C -6 B C -5 B A -4 B G -3 B U -2 B A -
1 B GTP 1 C G 2 C A 9 C U 10 C A 11 C C 12 C U 13
C A 14 C C 15 C U 16 C G 28 C A 29 C U 47 C A 71 C
|
|
4 |
 |
3.69 |
3.69 |
37.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 4 C A 42 C A 43 C G 45 C G 46 C U 48 C U 49 C G
50 C A 51 C G 69 C C 70 C G 72 C G 78 C U 107 C C
108 C U 109 C C 110 C A 111 C A 114 C CA 1027 C
|
|
5 |
 |
2.25 |
2.25 |
38.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C -6 B C -5 B A -4 B G -3 B U -2 B A -
1 B GTP 1 C G 2 C A 9 C U 10 C A 11 C C 12 C U 13
C A 14 C U 47 C U 49 C G 50 C U 68 C G 69 C C 70
C A 71 C CA 1028 C
|
|
6 |
 |
3.69 |
3.69 |
40.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 46 C U 48 C U 49 C G 50 C A 51 C U 68 C G 69 C
C 70 C G 72 C A 73 C G 74 C G 75 C G 78 C C 79 C
A 80 C G 81 C C 82 C G 105 C U 107 C C 108 C
|
|
7 |
 |
2.29 |
2.29 |
40.5 |
-1.79 |
-0.69 |
20.6 |
78 |
4 |
2 |
0 |
0 |
0 |
0 |
0 |
C 55 C A 56 C A 80 C G 105 C U 106 C U 107 C C
1003 C C 1004 C A 1005 C U 1006 C C 1013 C C 1014
C G 1015 C G 1016 C CA 1026 C
|
|
8 |
 |
2.75 |
2.75 |
45.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A -
1 B A 4 C A 14 C C 15 C U 16 C G 28 C A 29 C A 42
C A 43 C G 45 C G 46 C U 47 C U 48 C U 49 C A 71
C G 72 C A 73 C G 78 C U 107 C C 108 C U 109 C C
110 C A 111 C A 114 C CA 1027 C
|
|
9 |
 |
2.74 |
2.74 |
49.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A -
1 B A 14 C C 15 C U 16 C G 28 C A 29 C G 46 C U
47 C U 48 C C 70 C A 71 C G 72 C A 73 C G 74 C G
75 C G 78 C C 79 C A 80 C G 81 C C 82 C G 105 C U
107 C C 108 C
|
|
10 |
 |
2.70 |
2.70 |
27.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A -
1 E A 14 F C 15 F U 16 F G 28 F A 29 F U 47 F U
48 F U 49 F U 57 F G 69 F C 70 F A 71 F G 72 F G
87 F G 88 F U 106 F U 107 F
|
|
11 |
 |
3.08 |
3.08 |
28.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 45 F G 46 F U 48 F U 49 F G 50 F U 57 F G 69 F
C 70 F G 72 F G 77 F G 78 F G 88 F U 106 F U 107
F C 108 F U 109 F C 110 F
|
|
12 |
|
2.94 |
2.94 |
28.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A -
1 E A 14 F C 15 F U 16 F G 28 F A 29 F C 40 F A
43 F G 45 F G 46 F U 47 F U 48 F U 49 F G 50 F C
70 F A 71 F G 72 F A 73 F G 77 F G 78 F G 87 F U
106 F C 108 F U 109 F C 110 F
|
|
13 |
|
2.36 |
2.36 |
41.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A -
1 E GTP 1 F G 2 F A 3 F U 8 F C 12 F U 13 F G 28
F A 29 F C 30 F A 31 F U 47 F U 48 F U 49 F C 86
F G 87 F A 112 F C 113 F CA 1028 F
|
|
14 |
|
2.36 |
2.36 |
45.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A -
1 E GTP 1 F G 2 F U 8 F A 14 F C 15 F U 16 F G 28
F A 29 F C 30 F A 31 F U 47 F C 70 F A 71 F C 86
F G 87 F G 88 F CA 1028 F
|
|
15 |
|
3.07 |
3.07 |
57.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 12 F U 13 F A 14 F U 49 F G 50 F A 51 F U 57 F
U 68 F G 69 F C 70 F G 72 F G 88 F U 106 F U 107
F C 113 F
|
|
16 |
|
3.49 |
3.49 |
62.9 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 12 F U 13 F A 14 F C 40 F A 43 F G 45 F G 46 F
U 48 F U 49 F G 50 F A 51 F U 68 F G 69 F C 70 F
G 72 F G 77 F G 78 F U 107 F C 108 F U 109 F C
110 F C 113 F
|
|
17 |
|
3.23 |
3.23 |
65.3 |
-0.62 |
-0.78 |
6.1 |
77 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
G 45 F G 46 F U 48 F U 49 F G 50 F A 51 F G 52 F
A 53 F A 54 F C 55 F A 56 F U 57 F A 67 F U 68 F
G 69 F C 70 F G 72 F G 77 F G 78 F U 107 F C 108
F U 109 F C 110 F C 1002 F C 1003 F C 1004 F A
1005 F U 1006 F G 1015 F G 1016 F G 1017 F U 1018
F CA 1025 F CA 1029 F
|
 |
18 |
|
3.23 |
3.23 |
77.6 |
-0.71 |
-0.77 |
7.2 |
77 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
C 12 F U 13 F A 14 F U 49 F G 50 F A 51 F G 52 F
A 53 F A 54 F C 55 F A 56 F U 57 F A 67 F U 68 F
G 69 F C 70 F C 113 F C 1002 F C 1003 F C 1004 F
A 1005 F U 1006 F G 1015 F G 1016 F G 1017 F U
1018 F CA 1025 F CA 1029 F
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program