PDBsum entry 3qxe

Pore analysis for: 3qxe calculated with

MOLE 2.0

PDB id

3qxe

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

17 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.07

1.23

28.9

-0.61

-0.29

10.3

78

3

1

0

5

4

0

0

GOL 213 E

2

1.51

1.67

30.2

-2.14

-0.31

30.0

84

6

5

0

3

1

1

0

3

2.93

5.05

31.4

-2.86

-0.70

35.7

81

3

6

3

2

0

1

0

4

3.02

3.26

32.4

-2.19

-0.67

21.8

85

4

2

3

0

1

0

0

5

1.28

1.30

33.6

0.25

0.26

9.9

73

2

2

3

7

5

0

0

CSD 115 G

6

1.67

1.93

35.7

-0.70

-0.57

8.8

91

2

2

4

5

0

1

0

7

2.88

2.88

43.6

-2.10

-0.66

25.7

77

2

6

2

3

1

3

0

8

1.86

1.86

47.8

-1.36

-0.65

15.6

90

2

5

4

5

0

2

0

9

1.14

1.47

50.0

-0.44

0.07

8.4

71

4

1

4

7

4

3

0

10

3.01

3.26

54.4

-1.89

-0.60

20.7

79

4

5

3

2

2

2

0

11

1.23

1.57

61.9

-1.21

-0.48

16.0

78

9

2

3

5

4

1

0

GOL 213 E

12

1.29

1.32

62.3

-0.10

-0.07

8.3

78

4

3

4

9

5

1

0

CSD 115 A

13

1.27

1.57

68.6

-0.83

-0.15

14.5

79

5

5

5

9

6

2

0

CSD 115 E GOL 213 E

14

1.12

1.28

68.1

-1.58

-0.49

20.2

76

6

4

3

4

4

1

0

15

1.09

1.21

71.7

-0.55

-0.10

9.9

79

5

3

4

11

6

0

0

CSD 115 E GOL 213 E

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.