PDBsum entry 3q3v

Pore analysis for: 3q3v calculated with

MOLE 2.0

PDB id

3q3v

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

4 pores, coloured by radius

7 pores, coloured by radius

7 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.54

2.24

25.3

-0.89

-0.32

17.0

86

3

2

2

1

1

1

0

K 401 A

2

2.77

4.92

25.8

-2.45

-0.51

22.5

84

6

1

2

1

0

1

0

3

2.16

2.16

26.0

-1.40

-0.38

21.5

81

6

2

1

2

1

1

0

4

2.12

3.01

30.5

-1.13

-0.27

22.7

88

6

3

2

1

1

0

0

5

1.49

1.77

34.9

-1.96

-0.42

27.1

87

5

3

2

2

1

1

0

PGE 407 B

6

1.48

1.78

37.7

-1.97

-0.39

23.5

83

5

2

2

3

1

2

0

7

1.42

1.42

42.9

-2.55

-0.41

32.3

86

9

1

1

1

0

0

0

SO4 406 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.