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PDBsum entry 3pys
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 3pys calculated with MOLE 2.0 PDB id
3pys
Pores calculated on whole structure Pores calculated excluding ligands
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32 pores, coloured by radius 32 pores, coloured by radius 32 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.39 1.39 65.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 102 A i:A A 103 A i:A G 103 A i:B G 103 A i:C G
993 A A 994 A C 998 A i:B U 999 A A 1000 A G 1002
A G 1003 A A 1004 A G 1017 A C 1018 A G 1026 A C
1027 A G 1029 A G 1031 A G 1033 A G 1034 A A 1035
A G 1036 A C 1037 A C 1038 A C 1039 A U 1040 A A
1041 A G 1042 A
2 1.24 1.24 68.9 -1.37 -0.62 14.8 82 7 0 0 1 0 1 0  A 994 A G 1017 A C 1038 A C 1039 A C 1217 A C
1218 A C 1244 A A 1245 A C 1246 A U 1257 A G 1258
A C 1259 A C 1260 A A 1261 A G 1266 A A 1268 A A
1269 A C 1270 A G 1271 A G 1294 A U 1315 A G 1316
A A 1360 A G 1361 A
3 1.43 1.43 91.0 -0.49 -0.79 4.5 72 1 0 0 0 0 0 0  G 530 A A 572 A A 573 A U 723 A G 724 A U 833 A G
854 A G 855 A C 856 A C 857 A C 866 A G 867 A G
886 A G 887 A A 915 A G 916 A G 917 A A 918 A A
919 A C 1054 A G 1392 A U 1393 A A 1394 A C 1397
A C 1402 A C 1403 A C 1404 A C 1490 A G 1491 A A
1493 A C 1509 A U 1510 A U 1528 A G 1529 A G 1530
A
4 1.85 1.86 103.4 -1.01 -0.69 10.4 73 5 0 0 1 0 3 0  U 1095 A A 1110 A A 1111 A C 1112 A C 1113 A C
1114 A C 1115 A C 1116 A C 1118 A G 1127 A A 1151
A A 1152 A C 1153 A G 1154 A G 1155 A G 1156 A C
1158 A U 1159 A G 1160 A C 1161 A A 1170 A G 1171
A C 1244 A A 1245 A C 1246 A U 1247 A A 1248 A C
1249 A A 1250 A A 1251 A A 1252 A G 1253 A C 1262
A C 1263 A A 1268 A A 1280 A U 1281 A A 1285 A A
1286 A A 1287 A G 1294 A
5 1.85 2.04 104.0 -1.82 -0.44 22.3 75 10 6 3 2 2 1 0  C 528 A G 530 A C 1054 A C 1071 A G 1072 A C 1096
A C 1097 A A 1105 A G 1106 A A 1110 A C 1161 A A
1169 A A 1170 A G 1193 A U 1194 A U 1196 A C 1397
A
6 1.93 1.93 104.8 -1.29 -0.67 15.0 78 8 1 0 1 0 1 0  G 664 A A 665 A G 667 A G 668 A U 669 A G 670 A G
671 A U 672 A G 673 A G 674 A A 675 A A 676 A G
709 A G 710 A G 711 A A 712 A G 713 A G 714 A A
715 A A 716 A C 720 A G 721 A A 722 A U 723 A G
724 A A 733 A G 734 A C 736 A C 738 A C 806 A U
833 A C 834 A
7 2.94 2.94 118.3 -0.75 -0.72 8.4 68 4 1 0 1 1 0 0  A 50 A G 52 A A 116 A G 117 A C 241 A C 242 A G
286 A U 287 A A 288 A G 317 A G 530 A A 573 A A
574 A U 884 A G 885 A G 886 A G 887 A G 888 A A
889 A G 890 A A 907 A A 908 A A 915 A G 916 A C
1054 A C 1397 A C 1402 A C 1403 A C 1404 A C 1424
A C 1479 A C 1490 A G 1491 A A 1493 A U 1510 A
8 1.60 1.60 122.9 -1.30 -0.69 15.5 76 8 4 0 1 0 1 0  G 858 A A 859 A A 860 A C 866 A G 867 A U 920 A U
921 A G 922 A G 1068 A C 1069 A C 1076 A G 1077 A
G 1082 A U 1083 A U 1085 A U 1086 A G 1094 A C
1096 A C 1097 A A 1105 A C 1161 A A 1169 A A 1170
A C 1389 A U 1390 A U 1391 A
9 2.30 2.50 128.5 -0.98 -0.73 11.2 74 7 3 0 1 0 1 0  G 530 A A 572 A A 573 A G 858 A A 859 A A 860 A C
866 A G 867 A G 886 A G 887 A A 915 A G 916 A G
917 A A 918 A A 919 A U 920 A C 1054 A C 1076 A G
1077 A G 1082 A U 1391 A G 1392 A U 1393 A A 1394
A C 1397 A C 1402 A C 1403 A C 1404 A C 1490 A G
1491 A A 1493 A C 1509 A U 1510 A G 1529 A G 1530
A
10 2.01 2.01 147.5 -1.06 -0.76 9.5 86 6 1 4 0 0 1 0  G 530 A C 924 A G 925 A A 937 A A 938 A G 939 A C
940 A G 941 A G 942 A G 966 A C 1195 A U 1196 A C
1237 A A 1238 A G 1241 A C 1242 A C 1243 A C 1244
A A 1245 A C 1246 A U 1247 A C 1262 A C 1263 A A
1268 A A 1286 A A 1288 A A 1289 A G 1290 A G 1294
A C 1336 A G 1337 A A 1340 A U 1341 A C 1352 A C
1383 A C 1384 A G 1385 A G 1386 A C 1397 A A 1398
A C 1399 A C 1400 A G 1401 A A 1493 A U 6185 V U
6186 V A 6187 V G 6188 V U 6212 V U 6216 V
11 1.57 1.74 147.6 -1.17 -0.62 15.2 80 9 1 0 2 0 0 0  C 102 A i:A A 103 A i:A G 103 A i:B G 103 A i:C A
996 A U 997 A C 998 A i:B G 998 A i:A U 999 A A
1000 A G 1002 A G 1003 A A 1004 A G 1026 A C 1027
A G 1029 A G 1031 A G 1033 A G 1034 A A 1035 A G
1036 A C 1037 A C 1244 A A 1245 A C 1246 A U 1257
A G 1258 A C 1259 A C 1260 A A 1261 A G 1266 A A
1268 A A 1269 A C 1270 A G 1271 A G 1294 A U 1315
A G 1316 A A 1360 A G 1361 A
12 1.26 1.26 149.4 -1.06 -0.68 11.8 78 8 1 1 2 1 0 0  U 420 A U 421 A C 422 A G 505 A U 512 A C 513 A C
514 A C 528 A G 530 A A 532 A U 534 A A 535 A G
993 A A 994 A A 996 A U 997 A C 998 A i:B G 998 A
i:A C 1007 A G 1017 A C 1018 A C 1037 A C 1038 A
C 1039 A U 1040 A A 1041 A G 1042 A C 1045 A A
1046 A G 1047 A G 1048 A C 1054 A U 1196 A A 1204
A U 1205 A G 1206 A G 1207 A C 1208 A C 1209 A C
1397 A
13 2.74 2.74 166.9 -0.55 -0.78 5.1 79 5 0 1 0 0 1 0  G 530 A A 572 A A 573 A A 665 A U 669 A G 670 A G
671 A U 672 A G 673 A G 674 A A 675 A A 676 A G
709 A G 710 A G 711 A A 712 A G 713 A G 714 A A
715 A A 716 A C 717 A U 723 A G 724 A C 732 A A
733 A C 805 A C 806 A C 856 A C 857 A C 866 A G
867 A G 886 A G 887 A A 915 A G 916 A G 917 A A
918 A A 919 A C 1054 A G 1392 A U 1393 A A 1394 A
C 1397 A C 1402 A C 1403 A C 1404 A C 1490 A G
1491 A A 1493 A C 1509 A U 1510 A G 1525 A G 1526
A C 1527 A U 1528 A G 1529 A G 1530 A
14 1.28 1.28 168.3 -1.10 -0.74 9.5 81 5 4 5 2 1 2 0  G 530 A A 573 A A 574 A G 575 A G 576 A G 577 A U
582 A A 648 A G 649 A G 650 A C 651 A G 752 A G
760 A G 761 A C 762 A C 812 A U 813 A A 814 A A
815 A C 882 A G 886 A G 887 A G 890 A C 896 A C
897 A C 904 A U 905 A A 915 A G 916 A C 1054 A C
1397 A C 1402 A C 1403 A C 1404 A C 1490 A G 1491
A A 1493 A U 1510 A G 1511 A
15 1.66 1.66 171.4 -1.24 -0.75 11.1 87 7 1 5 0 0 1 0  G 693 A U 723 A G 724 A U 833 A G 854 A G 855 A C
856 A A 937 A A 938 A G 939 A C 940 A G 941 A G
942 A C 1237 A A 1238 A G 1241 A C 1242 A C 1243
A C 1244 A A 1245 A C 1246 A U 1247 A C 1262 A C
1263 A A 1268 A A 1286 A A 1288 A A 1289 A G 1290
A G 1294 A C 1336 A G 1337 A A 1340 A U 1341 A C
1352 A A 1503 A G 1505 A A 1507 A U 1528 A G 1530
A A 1531 A U 1532 A C 1533 A U 6193 V U 6212 V A
6213 V
16 2.67 2.67 170.6 -0.95 -0.74 10.1 82 6 3 1 1 0 1 0  G 530 A A 572 A A 573 A G 662 A G 664 A A 665 A G
667 A G 668 A U 669 A G 670 A A 716 A C 717 A U
723 A G 724 A C 732 A A 733 A G 734 A C 736 A C
738 A C 739 A U 740 A C 805 A C 806 A C 856 A C
857 A C 866 A G 867 A G 886 A G 887 A A 915 A G
916 A G 917 A A 918 A A 919 A C 1054 A G 1392 A U
1393 A A 1394 A C 1397 A C 1402 A C 1403 A C 1404
A C 1490 A G 1491 A A 1493 A C 1509 A U 1510 A G
1525 A G 1526 A C 1527 A U 1528 A G 1529 A G 1530
A
17 1.78 1.78 171.1 -0.96 -0.66 11.2 78 9 1 1 2 1 0 0  C 102 A i:A A 103 A i:A G 103 A i:B G 103 A i:C U
420 A U 421 A C 422 A G 505 A U 512 A C 513 A C
514 A C 528 A G 530 A A 532 A U 534 A A 535 A A
996 A U 997 A C 998 A i:B G 998 A i:A U 999 A A
1000 A G 1002 A G 1003 A A 1004 A G 1026 A C 1027
A G 1029 A G 1031 A G 1033 A G 1034 A A 1035 A G
1036 A C 1037 A C 1045 A A 1046 A G 1047 A G 1048
A C 1054 A U 1196 A A 1204 A U 1205 A G 1206 A G
1207 A C 1208 A C 1209 A C 1397 A
18 1.16 1.07 177.3 -1.20 -0.43 17.4 85 12 7 3 10 0 3 0  A 994 A C 1007 A G 1017 A C 1038 A C 1039 A U
1095 A A 1110 A A 1111 A C 1112 A C 1113 A C 1153
A G 1154 A G 1155 A U 1159 A G 1160 A C 1161 A A
1170 A G 1171 A C 1217 A C 1218 A A 1256 A U 1257
A U 1278 A
19 2.06 2.06 178.2 -0.62 -0.78 6.2 74 5 0 0 0 0 0 0  C 58 A A 59 A G 61 A A 120 A C 121 A G 122 A C
233 A U 239 A C 240 A C 241 A C 242 A A 243 A U
244 A U 252 A U 253 A G 265 A C 267 A C 268 A G
281 A A 282 A C 283 A C 314 A A 315 A G 316 A G
319 A C 320 A C 328 A A 329 A C 330 A G 331 A G
332 A G 333 A G 350 A G 351 A G 530 A A 573 A A
574 A G 575 A G 576 A G 577 A A 759 A G 760 A A
814 A A 815 A G 881 A C 882 A G 886 A G 887 A G
890 A U 905 A G 906 A A 915 A G 916 A C 1054 A C
1397 A C 1402 A C 1403 A C 1404 A C 1490 A G 1491
A A 1493 A U 1510 A G 1511 A
20 2.51 2.51 179.4 -0.86 -0.72 9.6 71 11 2 0 1 1 1 0  A 50 A G 52 A A 116 A G 117 A C 241 A C 242 A A
243 A U 244 A G 286 A U 287 A A 288 A G 317 A G
668 A U 669 A G 670 A G 671 A U 672 A G 673 A G
674 A A 675 A A 676 A G 709 A G 710 A G 711 A A
712 A G 713 A G 714 A A 715 A A 716 A C 732 A A
733 A A 759 A G 760 A G 761 A C 762 A G 763 A C
764 A G 765 A A 766 A A 767 A C 806 A A 807 A C
810 A C 811 A C 812 A C 882 A G 895 A C 896 A C
897 A G 903 A C 904 A U 905 A G 906 A A 907 A A
908 A C 1424 A C 1479 A
21 2.10 2.10 183.6 -1.21 -0.66 12.7 83 13 3 4 3 1 2 0  A 675 A A 676 A G 693 A G 709 A G 718 A C 796 A A
937 A A 938 A G 939 A C 940 A G 941 A G 942 A C
1237 A A 1238 A G 1241 A C 1242 A C 1243 A C 1244
A A 1245 A C 1246 A U 1247 A C 1262 A C 1263 A A
1268 A A 1286 A A 1288 A A 1289 A G 1290 A G 1294
A C 1336 A G 1337 A A 1340 A U 1341 A C 1352 A G
1505 A U 1506 A A 1507 A U 6193 V U 6212 V A 6213
V
22 1.81 1.81 190.4 -1.02 -0.62 12.1 81 11 2 1 4 2 1 0  A 675 A A 676 A G 693 A G 709 A G 718 A C 796 A G
933 A C 934 A A 935 A C 936 A A 937 A C 1063 A G
1064 A U 1065 A C 1066 A U 1095 A A 1110 A A 1111
A C 1112 A C 1158 A U 1159 A G 1160 A C 1161 A A
1169 A A 1170 A G 1171 A A 1183 A G 1186 A G 1187
A A 1188 A C 1189 A A 1340 A U 1341 A C 1342 A C
1344 A C 1383 A C 1384 A G 1385 A G 1505 A U 1506
A A 1507 A U 6185 V U 6193 V U 6212 V A 6213 V
23 1.19 1.20 187.2 -1.03 -0.52 14.7 81 11 3 1 6 0 2 0  A 994 A G 1017 A C 1038 A C 1039 A C 1217 A C
1218 A U 1257 A G 1258 A G 1272 A G 1309 A G 1310
A G 1311 A G 1312 A U 1315 A G 1316 A C 1317 A A
1318 A A 1360 A
24 1.73 1.73 218.0 -0.97 -0.46 16.0 83 11 8 3 10 0 2 0  C 102 A i:A A 103 A i:A G 103 A i:B G 103 A i:C A
996 A U 997 A C 998 A i:B G 998 A i:A U 999 A A
1000 A G 1002 A G 1003 A A 1004 A G 1026 A C 1027
A G 1029 A G 1031 A G 1033 A G 1034 A A 1035 A G
1036 A C 1037 A U 1095 A A 1110 A A 1111 A C 1112
A C 1113 A C 1153 A G 1154 A G 1155 A U 1159 A G
1160 A C 1161 A A 1170 A G 1171 A
25 1.94 2.06 253.1 -1.02 -0.73 9.8 79 11 2 4 1 1 1 0  A 50 A G 52 A A 116 A G 117 A C 241 A C 242 A G
286 A U 287 A A 288 A G 317 A A 573 A A 574 A G
693 A C 796 A U 884 A G 885 A G 886 A G 887 A G
888 A A 889 A G 890 A A 907 A A 908 A A 937 A A
938 A G 939 A C 940 A G 941 A G 942 A C 1237 A A
1238 A G 1241 A C 1242 A C 1243 A C 1244 A A 1245
A C 1246 A U 1247 A C 1262 A C 1263 A A 1268 A A
1286 A A 1288 A A 1289 A G 1290 A G 1294 A C 1336
A G 1337 A A 1340 A U 1341 A C 1352 A G 1405 A C
1424 A C 1479 A G 1505 A U 1506 A A 1507 A G 1508
A C 1509 A U 1510 A G 1511 A U 1512 A G 1520 A G
1521 A U 1522 A G 1523 A U 6193 V U 6212 V A 6213
V
26 1.62 1.62 256.9 -1.24 -0.70 12.5 85 12 2 7 2 1 0 0  C 136 A i:B G 693 A U 723 A G 724 A U 833 A G 854
A G 855 A C 856 A A 937 A A 938 A G 939 A C 940 A
G 941 A G 942 A C 1234 A U 1235 A A 1236 A C 1237
A U 1307 A G 1309 A G 1310 A G 1311 A G 1312 A A
1319 A C 1320 A G 1323 A A 1324 A C 1325 A C 1336
A G 1337 A A 1340 A U 1341 A U 1351 A C 1352 A G
1353 A C 1354 A G 1355 A G 1356 A A 1363 A U 1364
A G 1365 A A 1503 A G 1505 A A 1507 A U 1528 A G
1530 A A 1531 A U 1532 A C 1533 A U 6193 V U 6212
V A 6213 V
27 1.22 1.37 263.2 -0.97 -0.54 15.2 79 12 4 1 7 0 1 0  C 102 A i:A A 103 A i:A G 103 A i:B G 103 A i:C A
996 A U 997 A C 998 A i:B G 998 A i:A U 999 A A
1000 A G 1002 A G 1003 A A 1004 A G 1026 A C 1027
A G 1029 A G 1031 A G 1033 A G 1034 A A 1035 A G
1036 A C 1037 A U 1257 A G 1258 A G 1272 A G 1309
A G 1310 A G 1311 A G 1312 A U 1315 A G 1316 A C
1317 A A 1318 A A 1360 A
28 1.83 1.83 269.2 -1.22 -0.65 13.5 83 17 4 6 5 2 1 0  C 136 A i:B A 675 A A 676 A G 693 A G 709 A G 718
A C 796 A A 937 A A 938 A G 939 A C 940 A G 941 A
G 942 A C 1234 A U 1235 A A 1236 A C 1237 A U
1307 A G 1309 A G 1310 A G 1311 A G 1312 A A 1319
A C 1320 A G 1323 A A 1324 A C 1325 A C 1336 A G
1337 A A 1340 A U 1341 A U 1351 A C 1352 A G 1353
A C 1354 A G 1355 A G 1356 A A 1363 A U 1364 A G
1365 A G 1505 A U 1506 A A 1507 A U 6193 V U 6212
V A 6213 V
29 1.73 1.73 293.0 -1.22 -0.58 16.3 81 17 5 2 7 1 1 0  U 420 A U 421 A C 422 A G 505 A U 512 A C 513 A C
514 A C 528 A G 530 A A 532 A U 534 A A 535 A A
996 A C 1045 A A 1046 A G 1047 A G 1048 A C 1054
A U 1196 A A 1204 A U 1205 A G 1206 A G 1207 A C
1208 A C 1209 A U 1257 A G 1258 A G 1272 A G 1309
A G 1310 A G 1311 A G 1312 A U 1315 A G 1316 A C
1317 A A 1318 A A 1360 A C 1397 A
30 1.66 1.67 308.0 -0.91 -0.45 16.0 82 12 10 4 14 0 3 0  U 1095 A A 1110 A A 1111 A C 1112 A C 1113 A C
1153 A G 1154 A G 1155 A U 1159 A G 1160 A C 1161
A A 1170 A G 1171 A A 1256 A U 1257 A G 1258 A C
1260 A G 1272 A G 1273 A G 1274 A A 1275 A C 1277
A U 1278 A G 1309 A G 1310 A G 1311 A G 1312 A U
1315 A G 1316 A C 1317 A A 1318 A
31 1.35 1.54 27.5 1.64 0.35 9.5 78 0 3 0 9 0 0 0  
32 1.43 2.69 33.2 1.57 0.40 12.1 82 0 4 0 9 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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