spacer
spacer

PDBsum entry 3pw5

Go to PDB code: 
Top Page protein dna_rna ligands metals pores links
Pore analysis for: 3pw5 calculated with MOLE 2.0 PDB id
3pw5
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.81 3.00 42.0 -0.31 0.16 20.2 88 5 0 2 5 0 1 0  DT 373 B DG 374 B DA 375 B DA 376 B DT 377 B DC
378 B DC 379 B AFN 387 B DG 351 C DA 352 C DG 355
C DA 356 C
2 2.01 2.13 59.0 -0.37 0.12 21.5 88 6 2 3 7 0 0 0  CA 1003 A DG 374 B DA 375 B DA 376 B DT 377 B DC
378 B DC 379 B AFN 387 B DG 351 C DA 352 C DG 355
C DA 356 C DT 358 C DC 359 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer