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PDBsum entry 3pw0

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 3pw0 calculated with MOLE 2.0 PDB id
3pw0
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.94 2.08 20.9 -1.37 0.02 29.7 94 3 0 1 2 0 0 0  DA 376 B DT 377 B DC 378 B DC 379 B DG 354 C DG
355 C
2 2.01 2.32 22.8 1.58 0.79 13.0 90 2 0 1 5 0 0 0  DT 373 B PVX 374 B DA 375 B DA 376 B DT 358 C DC
359 C
3 2.00 2.82 32.4 0.64 0.37 15.1 93 3 0 0 5 0 0 0  DT 373 B PVX 374 B DA 375 B DA 376 B DC 359 C
4 1.99 2.12 44.1 -0.31 0.14 16.0 91 6 0 3 6 1 0 0  DTP 400 A DT 373 B PVX 374 B DA 375 B DA 376 B DC
359 C
5 2.04 2.28 51.3 -0.28 0.00 11.9 84 5 1 1 6 3 0 0  DTP 400 A DT 373 B PVX 374 B DA 375 B DA 376 B DT
377 B DC 378 B DC 359 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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