 |
PDBsum entry 3pmh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3pmh calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3pmh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 pores,
coloured by radius |
|
5 pores,
coloured by radius
|
5 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.21 |
1.67 |
27.4 |
-0.59 |
-0.18 |
10.7 |
83 |
|
2 |
0 |
3 |
3 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.17 |
2.40 |
34.6 |
-1.23 |
-0.10 |
12.9 |
78 |
3 |
2 |
2 |
2 |
2 |
1 |
0 |
|
|
3 |
 |
3.06 |
3.11 |
41.0 |
-1.74 |
-0.52 |
17.7 |
80 |
2 |
5 |
2 |
1 |
3 |
2 |
0 |
TYS 276 G TYS 278 G TYS 279 G
|
|
4 |
 |
1.40 |
1.40 |
46.1 |
-1.66 |
-0.60 |
20.8 |
76 |
6 |
6 |
0 |
0 |
3 |
1 |
0 |
0G7 301 B TYS 276 G TYS 278 G
|
 |
5 |
 |
1.15 |
2.33 |
51.1 |
-0.61 |
0.04 |
10.4 |
76 |
7 |
0 |
2 |
6 |
4 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program