PDBsum entry 3pfb Go to PDB code:  Tunnel analysis for: 3pfb calculated with MOLE 2.0 PDB id 3pfb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.51 3.07 16.9 -1.40 -0.33 13.0 89 1 2 4 3 1 0 0   2 1.13 1.34 20.9 1.69 0.58 6.6 73 1 2 2 6 1 2 0  NH4 251 B 3 1.14 1.33 27.0 1.56 0.57 5.4 78 1 2 2 8 1 2 0  NH4 251 B 4 1.46 1.87 36.2 1.45 0.59 7.2 82 1 3 4 10 2 1 0   5 1.45 1.77 16.4 -0.83 -0.42 10.4 81 0 1 2 4 1 0 0  ZYC 264 B 6 1.45 1.77 22.4 -0.14 0.06 6.1 79 2 0 2 6 2 0 1  ZYC 264 B 7 1.61 1.87 18.2 -0.19 0.07 5.6 84 1 0 2 7 2 0 0  ZYC 256 A 8 1.13 1.56 18.4 -0.98 -0.48 12.0 86 0 2 2 6 1 0 0  ZYC 256 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.