PDBsum entry 3pf8 Go to PDB code:  Tunnel analysis for: 3pf8 calculated with MOLE 2.0 PDB id 3pf8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.97 30.1 0.93 0.19 6.8 77 2 1 1 6 3 0 0   2 1.50 1.69 17.3 -0.95 -0.52 11.2 84 0 1 2 4 1 0 0   3 1.41 1.61 18.3 -0.14 0.02 5.6 81 1 0 3 5 2 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.