 |
PDBsum entry 3oxq
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3oxq calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3oxq
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.44 |
1.68 |
16.5 |
0.06 |
0.16 |
12.1 |
78 |
|
3 |
1 |
1 |
5 |
3 |
0 |
0 |
|
|
 |
|
2 |
 |
1.24 |
1.41 |
23.5 |
1.47 |
0.70 |
14.7 |
83 |
2 |
1 |
0 |
11 |
0 |
0 |
0 |
|
|
3 |
 |
1.22 |
1.57 |
24.9 |
2.44 |
0.87 |
4.6 |
84 |
2 |
1 |
0 |
12 |
0 |
0 |
0 |
|
 |
4 |
 |
1.24 |
1.41 |
33.7 |
2.32 |
0.80 |
2.4 |
80 |
1 |
1 |
0 |
14 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program