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PDBsum entry 3ogm
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Tunnel analysis for: 3ogm calculated with  MOLE 2.0
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PDB id
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3ogm
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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15 tunnels,
coloured by tunnel radius |
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21 tunnels,
coloured by
tunnel radius
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21 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.38 |
5.55 |
31.4 |
-1.51 |
0.23 |
27.4 |
69 |
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9 |
3 |
0 |
3 |
5 |
0 |
0 |
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PO4 1101 N PO4 1102 N OGK 7100 N
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2 |
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1.33 |
5.63 |
43.9 |
-2.18 |
0.07 |
30.9 |
70 |
12 |
1 |
1 |
3 |
5 |
1 |
0 |
PO4 1101 N PO4 1103 N OGK 7100 N
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3 |
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1.29 |
5.57 |
31.2 |
-1.55 |
0.27 |
27.1 |
68 |
8 |
2 |
0 |
3 |
5 |
0 |
0 |
PO4 1101 F PO4 1102 F OGK 3100 F
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4 |
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1.28 |
5.55 |
33.4 |
-1.58 |
0.24 |
26.3 |
69 |
8 |
3 |
0 |
2 |
5 |
1 |
0 |
PO4 1101 F PO4 1102 F OGK 3100 F
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5 |
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1.28 |
5.59 |
44.0 |
-1.89 |
0.17 |
28.3 |
70 |
12 |
1 |
1 |
3 |
5 |
1 |
0 |
PO4 1101 F PO4 1103 F OGK 3100 F
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6 |
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1.31 |
5.68 |
46.2 |
-2.05 |
0.11 |
29.1 |
71 |
12 |
2 |
1 |
2 |
5 |
2 |
0 |
PO4 1101 F PO4 1103 F OGK 3100 F
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7 |
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1.18 |
1.35 |
16.2 |
-0.95 |
0.07 |
18.0 |
76 |
1 |
2 |
1 |
3 |
2 |
0 |
0 |
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8 |
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1.19 |
1.37 |
17.6 |
-0.97 |
0.11 |
16.8 |
73 |
1 |
2 |
1 |
3 |
3 |
0 |
0 |
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9 |
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1.20 |
1.36 |
16.3 |
-1.18 |
0.02 |
17.9 |
76 |
1 |
2 |
1 |
3 |
2 |
0 |
0 |
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10 |
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1.18 |
1.37 |
16.0 |
-0.79 |
0.08 |
15.1 |
76 |
1 |
2 |
1 |
3 |
2 |
0 |
0 |
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11 |
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1.17 |
1.61 |
16.0 |
-0.62 |
0.14 |
16.0 |
76 |
1 |
2 |
1 |
3 |
2 |
0 |
0 |
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12 |
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1.20 |
1.36 |
15.7 |
-0.92 |
0.07 |
16.4 |
76 |
1 |
2 |
1 |
3 |
2 |
0 |
0 |
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13 |
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1.14 |
2.41 |
16.6 |
1.58 |
0.41 |
3.8 |
59 |
1 |
0 |
0 |
5 |
2 |
1 |
1 |
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14 |
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1.10 |
1.94 |
22.9 |
1.39 |
0.33 |
3.9 |
58 |
1 |
0 |
0 |
5 |
3 |
1 |
1 |
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15 |
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1.12 |
2.04 |
23.1 |
1.19 |
0.27 |
5.0 |
62 |
1 |
0 |
0 |
5 |
3 |
1 |
1 |
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16 |
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1.13 |
1.98 |
23.9 |
1.41 |
0.36 |
4.7 |
61 |
1 |
0 |
0 |
6 |
3 |
1 |
1 |
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17 |
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1.17 |
2.03 |
21.9 |
0.80 |
0.13 |
5.5 |
58 |
1 |
0 |
0 |
4 |
3 |
1 |
1 |
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18 |
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1.13 |
1.98 |
22.6 |
1.12 |
0.26 |
4.9 |
58 |
1 |
0 |
0 |
5 |
3 |
1 |
1 |
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19 |
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1.14 |
2.04 |
23.3 |
1.26 |
0.30 |
4.5 |
61 |
1 |
0 |
0 |
6 |
3 |
1 |
1 |
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20 |
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1.12 |
1.97 |
22.7 |
1.48 |
0.34 |
3.9 |
58 |
1 |
0 |
0 |
5 |
3 |
1 |
1 |
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21 |
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1.11 |
1.97 |
23.2 |
1.56 |
0.41 |
3.7 |
58 |
1 |
0 |
0 |
5 |
3 |
1 |
1 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program