 |
PDBsum entry 3ogd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3ogd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3ogd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 pores,
coloured by radius |
|
3 pores,
coloured by radius
|
3 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.81 |
2.08 |
91.9 |
-1.79 |
-0.59 |
17.8 |
74 |
|
6 |
2 |
1 |
0 |
0 |
3 |
1 |
|
DG 18 B DT 19 B DC 20 B DA 21 B DT 22 B DG 23 B
DC 3 C DA 4 C BRU 5 C DC 8 C BRU 9 C DG 10 C
|
 |
|
2 |
 |
2.35 |
3.74 |
99.5 |
-2.51 |
-0.33 |
32.0 |
78 |
7 |
5 |
2 |
2 |
1 |
2 |
0 |
DT 19 B DC 20 B DA 21 B DT 22 B DC 3 C DA 4 C
|
 |
3 |
 |
1.81 |
2.07 |
162.0 |
-1.85 |
-0.43 |
22.5 |
77 |
10 |
4 |
2 |
2 |
1 |
3 |
1 |
DG 18 B DC 20 B DA 21 B DT 22 B DG 23 B DC 3 C DC
8 C BRU 9 C DG 10 C
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program