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PDBsum entry 3og8
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Tunnel analysis for: 3og8 calculated with  MOLE 2.0
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PDB id
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3og8
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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8 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.28 |
1.28 |
24.1 |
-1.63 |
-0.69 |
20.9 |
85 |
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3 |
1 |
1 |
1 |
0 |
0 |
0 |
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DG 4 C DC 5 C DG 2 D DC 3 D DG 4 D DC 5 D
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2 |
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1.27 |
1.28 |
27.5 |
-2.15 |
-0.57 |
28.8 |
78 |
4 |
1 |
0 |
1 |
0 |
0 |
0 |
DC 13 C DC 14 C DG 1 D DG 2 D DC 3 D
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3 |
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1.27 |
1.28 |
27.6 |
-2.01 |
-0.48 |
27.9 |
74 |
4 |
2 |
0 |
1 |
1 |
1 |
0 |
DG 10 C DC 11 C DG 2 D DC 3 D
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4 |
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1.17 |
1.17 |
40.9 |
-1.26 |
-0.65 |
15.1 |
80 |
4 |
2 |
2 |
1 |
1 |
0 |
0 |
DG 2 C DC 3 C DG 4 C DC 5 C DG 6 C DG 2 D DC 3 D
DG 4 D DC 5 D DG 6 D
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5 |
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1.29 |
1.26 |
41.2 |
-1.69 |
-0.72 |
22.8 |
88 |
4 |
3 |
2 |
1 |
0 |
0 |
0 |
DC 5 C DG 6 C DG 2 D DC 3 D DG 4 D DC 5 D DG 6 D
DC 7 D DG 8 D DC 9 D
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6 |
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1.28 |
1.27 |
41.5 |
-1.53 |
-0.70 |
21.5 |
83 |
4 |
3 |
2 |
1 |
1 |
0 |
0 |
DC 5 C DG 6 C DG 2 D DC 3 D DG 4 D DC 5 D DG 6 D
DC 7 D DC 9 D DG 10 D
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7 |
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1.29 |
1.27 |
41.9 |
-1.35 |
-0.76 |
17.7 |
89 |
4 |
2 |
2 |
1 |
0 |
0 |
0 |
DC 5 C DG 6 C DG 2 D DC 3 D DG 4 D DC 5 D DG 6 D
DC 7 D DG 8 D DC 9 D
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8 |
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1.29 |
1.27 |
50.6 |
-2.12 |
-0.70 |
27.5 |
83 |
6 |
2 |
2 |
1 |
0 |
0 |
0 |
DG 1 C DG 2 C DC 3 C DG 4 C DC 5 C DG 6 C DG 2 D
DC 3 D DG 4 D DC 5 D DG 6 D DC 7 D DC 9 D DG 10 D
DC 11 D DG 12 D DC 13 D DC 14 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program