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PDBsum entry 3og0
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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3og0 calculated with MOLE 2.0 PDB id
3og0
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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27 tunnels, coloured by tunnel radius 28 tunnels, coloured by tunnel radius 28 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.52 76.0 -0.16 -0.51 3.5 79 1 0 0 4 1 1 0  A 1655 A C 1656 A C 2050 A A 2051 A G 2061 A A
2062 A A 2451 A C 2452 A G 2505 A U 2506 A C 2507
A C 2512 A C 2573 A G 2576 A A 2577 A G 2578 A C
2579 A G 2583 A U 2584 A U 2585 A A 2602 A C 2610
A C 2611 A C 2612 A U 2613 A MG 2966 A MG 2981 A
2 1.30 1.58 84.5 -0.59 -0.47 8.7 85 4 0 0 6 1 1 0  A 460 A C 461 A C 462 A A 470 A A 471 A G 745 A U
746 A U 747 A U 1258 A G 1259 A A 1260 A A 1655 A
C 1656 A U 1657 A A 2015 A C 2050 A A 2051 A G
2057 A A 2058 A A 2059 A C 2512 A C 2612 A U 2613
A MG 2966 A
3 1.22 1.30 90.3 -0.31 -0.64 3.6 78 1 1 0 4 1 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A G
757 A A 1269 A A 1272 A U 1273 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A G 1660 A G
1661 A A 1678 A A 1679 A U 1680 A G 1681 A A 1755
A A 1762 A A 2003 A G 2004 A C 2050 A A 2051 A C
2512 A U 2613 A C 2712 A C 2715 A C 2716 A C 2717
A MG 2956 A MG 2966 A
4 1.25 1.31 103.3 -0.24 -0.52 4.2 79 3 1 0 6 3 2 0  A 1265 A U 1267 A A 1268 A A 1284 A A 1285 A A
1286 A A 1655 A C 1656 A U 1657 A G 2004 A A 2005
A C 2006 A U 2007 A C 2008 A G 2046 A C 2047 A G
2048 A G 2049 A C 2050 A A 2051 A C 2512 A U 2613
A A 2614 A U 2615 A C 2815 A G 2816 A C 2824 A G
2825 A MG 2942 A MG 2966 A MG 3019 A
5 1.25 1.50 105.5 -0.53 -0.66 6.1 85 4 1 0 5 1 1 0  A 13 A A 14 A U 521 A A 1265 A U 1267 A A 1268 A
A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A C
2006 A U 2007 A C 2008 A G 2046 A C 2047 A G 2048
A G 2049 A C 2050 A A 2051 A C 2512 A U 2613 A A
2614 A U 2615 A G 2624 A G 2625 A C 2626 A G 2803
A A 2813 A A 2814 A C 2824 A G 2825 A C 2889 A G
2890 A MG 2942 A MG 2966 A MG 3019 A
6 1.25 1.32 107.4 -0.29 -0.61 3.5 79 1 0 0 4 1 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 1269 A
A 1272 A U 1273 A A 1274 A C 1289 A C 1290 A C
1291 A G 1292 A C 1293 A A 1302 A G 1332 A A 1608
A A 1609 A A 1618 A G 1619 A G 1642 A G 1643 A C
1644 A G 1645 A C 1646 A A 1655 A C 1656 A U 1657
A C 1658 A G 1659 A A 2003 A G 2004 A C 2050 A A
2051 A C 2512 A U 2613 A MG 2966 A
7 1.31 1.31 109.5 -0.60 -0.61 6.8 79 4 0 0 4 1 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A C 2512 A U
2613 A A 2614 A U 2615 A C 2616 A U 2617 A G 2618
A C 2619 A U 2622 A G 2623 A G 2624 A A 2634 A A
2635 A C 2636 A U 2637 A G 2638 A G 2770 A C 2771
A C 2772 A C 2773 A C 2774 A G 2775 A A 2776 A G
2777 A C 2827 A MG 2966 A MG 3000 A
8 1.27 1.53 111.4 -0.24 -0.62 3.3 83 1 0 1 4 1 1 0  A 742 A A 743 A U 744 A U 746 A A 1655 A C 1656 A
A 1672 A G 1673 A A 1936 A A 1937 A U 1943 A U
1944 A G 1945 A U 1946 A C 1947 A U 1955 A U 1956
A G 1984 A C 2050 A A 2051 A C 2512 A G 2553 A C
2558 A G 2578 A C 2579 A U 2580 A G 2581 A G 2582
A G 2583 A U 2605 A C 2606 A G 2607 A G 2608 A U
2609 A C 2610 A C 2611 A C 2612 A U 2613 A MG
2925 A MG 2966 A
9 1.27 1.57 113.2 -0.41 -0.64 4.7 78 2 0 0 4 1 1 0  U 3 A U 4 A A 5 A A 1655 A C 1656 A U 1657 A G
2004 A A 2005 A A 2042 A C 2043 A C 2044 A C 2045
A G 2046 A C 2047 A G 2048 A G 2049 A C 2050 A A
2051 A C 2512 A U 2613 A A 2614 A U 2615 A C 2616
A U 2617 A G 2618 A C 2619 A U 2622 A G 2623 A G
2624 A G 2627 A C 2628 A U 2629 A G 2630 A G 2631
A A 2632 A G 2633 A A 2634 A A 2635 A C 2636 A C
2774 A G 2775 A A 2776 A G 2777 A U 2783 A U 2784
A C 2785 A U 2786 A C 2827 A MG 2966 A MG 3000 A
10 1.22 1.28 113.1 -0.46 -0.66 3.4 87 1 0 4 4 1 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A A
1269 A A 1272 A U 1273 A A 1274 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A U 1709 A A
2003 A G 2004 A C 2050 A A 2051 A C 2512 A U 2613
A U 2690 A U 2695 A U 2696 A G 2697 A U 2698 A C
2704 A A 2705 A U 2707 A G 2708 A G 2709 A C 2710
A A 2711 A C 2712 A U 2713 A G 2714 A C 2715 A MG
3001 A
11 1.26 1.50 118.6 -0.47 -0.67 5.2 78 3 1 1 4 1 1 0  U 525 A A 528 A A 529 A G 530 A G 533 A U 534 A G
535 A C 550 A G 551 A U 552 A G 553 A U 554 A G
555 A A 556 A G 1220 A C 1221 A A 1655 A C 1656 A
U 1657 A G 2004 A A 2005 A C 2021 A U 2022 A C
2023 A C 2044 A C 2045 A G 2046 A C 2047 A G 2048
A G 2049 A C 2050 A A 2051 A C 2512 A U 2613 A A
2614 A U 2615 A C 2616 A U 2617 A G 2618 A C 2619
A MG 2966 A MG 3000 A
12 1.26 1.54 119.9 -0.67 -0.66 4.9 88 3 0 4 5 1 2 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A A
1269 A A 1272 A U 1273 A A 1274 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A A 2003 A G
2004 A C 2050 A A 2051 A C 2512 A U 2613 A U 2690
A C 2691 A G 2708 A G 2709 A A 2711 A C 2712 A U
2713 A C 2840 A C 2841 A G 2842 A C 2870 A U 2871
A A 2872 A MG 2966 A
13 1.25 1.53 120.2 -0.30 -0.65 3.4 79 1 0 0 4 1 1 0  G 701 A A 735 A C 736 A U 744 A G 745 A U 746 A A
749 A U 755 A A 756 A A 1269 A A 1272 A U 1273 A
A 1274 A G 1299 A G 1300 A A 1301 A A 1302 A A
1552 A A 1553 A U 1554 A C 1607 A A 1618 A G 1620
A G 1623 A U 1624 A C 1625 A A 1626 A G 1627 A G
1633 A A 1634 A U 1636 A A 1655 A C 1656 A U 1657
A C 1658 A G 1659 A A 2003 A G 2004 A C 2050 A A
2051 A C 2512 A U 2613 A MG 2966 A
14 1.22 1.32 119.3 -0.63 -0.63 7.2 78 4 0 0 4 1 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A C 2512 A U
2613 A A 2614 A U 2615 A C 2616 A U 2617 A G 2618
A C 2619 A U 2622 A G 2623 A G 2624 A G 2627 A G
2633 A A 2634 A C 2774 A G 2775 A A 2776 A G 2777
A A 2810 A G 2811 A G 2812 A A 2813 A C 2827 A G
2828 A A 2829 A A 2886 A MG 2966 A MG 3000 A
15 1.27 1.60 127.1 -0.32 -0.67 3.4 79 1 0 0 4 1 1 0  G 697 A C 698 A A 699 A G 700 A G 701 A A 735 A C
736 A U 744 A G 745 A U 746 A A 749 A U 755 A A
756 A A 1269 A A 1272 A U 1273 A A 1274 A G 1299
A A 1301 A A 1302 A A 1431 A G 1432 A A 1433 A A
1434 A U 1554 A G 1555 A C 1607 A A 1618 A G 1620
A G 1623 A U 1624 A C 1625 A A 1626 A A 1634 A U
1636 A A 1655 A C 1656 A U 1657 A C 1658 A G 1659
A A 2003 A G 2004 A C 2050 A A 2051 A C 2512 A U
2613 A MG 2966 A
16 1.24 1.27 133.2 -0.68 -0.56 7.8 79 6 1 1 6 2 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A C 2512 A U
2613 A A 2614 A U 2615 A C 2616 A U 2617 A G 2618
A C 2619 A G 2621 A U 2622 A G 2641 A G 2642 A U
2672 A G 2673 A G 2674 A C 2676 A G 2677 A C 2678
A A 2679 A A 2725 A A 2726 A A 2727 A U 2728 A G
2729 A C 2730 A C 2773 A C 2774 A G 2777 A MG
2966 A MG 3000 A
17 1.24 1.29 139.2 -0.58 -0.55 7.1 77 6 0 0 5 2 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A C 2510 A U
2511 A C 2512 A A 2513 A G 2545 A U 2546 A A 2547
A U 2548 A G 2549 A C 2556 A G 2557 A C 2558 A C
2559 A A 2566 A G 2567 A U 2568 A U 2613 A A 2614
A U 2615 A C 2616 A U 2617 A G 2618 A C 2619 A G
2621 A U 2622 A G 2641 A G 2642 A G 2643 A G 2644
A C 2676 A G 2677 A C 2678 A C 2773 A C 2774 A G
2777 A MG 2966 A MG 2980 A MG 3000 A
18 1.24 1.25 142.9 -0.33 -0.69 3.4 79 1 0 0 4 1 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 1269 A
A 1272 A U 1273 A A 1274 A A 1302 A G 1303 A A
1304 A C 1305 A C 1315 A G 1346 A G 1382 A A 1383
A A 1384 A C 1386 A A 1387 A G 1388 A G 1389 A U
1391 A A 1393 A U 1396 A G 1514 A A 1515 A C 1556
A C 1557 A U 1559 A C 1605 A C 1606 A A 1608 A A
1609 A A 1618 A G 1619 A U 1624 A C 1625 A A 1641
A G 1642 A G 1643 A C 1644 A C 1646 A A 1655 A C
1656 A U 1657 A C 1658 A G 1659 A A 2003 A G 2004
A C 2050 A A 2051 A C 2512 A U 2613 A MG 2949 A
MG 2966 A
19 1.21 1.23 148.0 -0.33 -0.68 3.5 79 1 0 0 4 1 1 0  U 525 A A 528 A A 529 A G 530 A G 533 A A 556 A U
558 A G 559 A C 560 A G 561 A A 979 A A 980 A A
981 A A 1001 A G 1002 A G 1003 A A 1008 A G 1025
A C 1135 A G 1136 A C 1145 A C 1146 A A 1147 A U
1148 A A 1655 A C 1656 A U 1657 A G 2004 A A 2005
A C 2021 A U 2022 A C 2023 A G 2038 A C 2044 A C
2045 A G 2046 A C 2047 A G 2048 A G 2049 A C 2050
A A 2051 A C 2512 A U 2613 A A 2614 A U 2615 A C
2616 A U 2617 A G 2618 A C 2619 A MG 2914 A MG
2966 A MG 3000 A G 86 B
20 1.27 1.53 151.4 -0.33 -0.68 3.4 79 1 0 0 4 1 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 1269 A
A 1272 A U 1273 A A 1274 A A 1302 A G 1303 A A
1304 A C 1305 A C 1315 A G 1388 A G 1389 A U 1391
A A 1393 A A 1439 A U 1440 A G 1441 A U 1467 A U
1468 A C 1518 A G 1519 A U 1520 A A 1522 A U 1523
A C 1547 A A 1548 A C 1605 A C 1606 A A 1608 A A
1609 A A 1618 A G 1619 A C 1625 A A 1641 A G 1642
A G 1643 A C 1644 A C 1646 A A 1655 A C 1656 A U
1657 A C 1658 A G 1659 A A 2003 A G 2004 A C 2050
A A 2051 A C 2512 A U 2613 A MG 2949 A MG 2966 A
21 1.27 1.34 155.6 -0.51 -0.58 7.0 78 5 1 0 5 2 1 0  A 676 A A 677 A C 679 A C 680 A G 681 A G 682 A G
775 A G 776 A G 777 A U 790 A C 791 A A 794 A C
795 A C 796 A G 797 A G 798 A A 1655 A C 1656 A C
1804 A A 1805 A C 1806 A G 1807 A A 1808 A G 1845
A G 1846 A C 2050 A A 2051 A A 2059 A A 2062 A A
2082 A G 2083 A C 2084 A U 2085 A U 2086 A G 2239
A C 2442 A C 2443 A G 2505 A C 2512 A G 2576 A A
2577 A G 2578 A C 2579 A U 2609 A C 2610 A C 2611
A C 2612 A U 2613 A MG 2928 A MG 2966 A MG 2981 A
22 1.29 1.51 162.3 -0.33 -0.68 3.4 79 1 0 0 4 1 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 1269 A
A 1272 A U 1273 A A 1274 A A 1302 A G 1303 A A
1304 A C 1305 A C 1315 A G 1388 A G 1389 A U 1391
A A 1393 A G 1441 A U 1442 A U 1443 A G 1444 A G
1445 A C 1446 A C 1447 A G 1459 A C 1461 A C 1462
A C 1463 A G 1464 A G 1465 A U 1466 A U 1467 A G
1527 A C 1605 A C 1606 A A 1608 A A 1609 A A 1618
A G 1619 A A 1640 A A 1641 A G 1642 A G 1643 A C
1644 A C 1646 A A 1655 A C 1656 A U 1657 A C 1658
A G 1659 A A 2003 A G 2004 A C 2050 A A 2051 A C
2512 A U 2613 A MG 2949 A MG 2966 A
23 1.31 1.50 188.5 -0.79 -0.58 9.3 77 9 2 1 6 3 1 0  G 1022 A U 1023 A G 1024 A A 1027 A A 1028 A A
1029 A C 1030 A G 1031 A G 1115 A G 1116 A C 1117
A G 1120 A C 1121 A G 1122 A C 1123 A G 1124 A G
1125 A A 1126 A A 1127 A G 1128 A A 1133 A A 1655
A C 1656 A U 1657 A G 2004 A A 2005 A A 2042 A C
2043 A C 2044 A C 2045 A G 2046 A C 2047 A G 2048
A G 2049 A C 2050 A A 2051 A C 2512 A U 2514 A C
2517 A A 2541 A A 2542 A G 2543 A G 2544 A U 2613
A A 2614 A U 2615 A C 2616 A U 2617 A G 2618 A C
2619 A C 2620 A G 2621 A U 2622 A G 2641 A G 2642
A G 2643 A G 2644 A G 2645 A C 2767 A C 2774 A G
2777 A MG 2993 A MG 3000 A U 87 B
24 1.31 1.51 192.9 -0.45 -0.66 5.3 79 3 0 0 4 1 1 0  A 676 A A 677 A C 679 A C 680 A G 681 A G 682 A G
775 A G 776 A G 777 A U 790 A C 791 A A 794 A C
795 A C 796 A G 797 A G 798 A A 1655 A C 1656 A A
1808 A C 2050 A A 2051 A A 2059 A A 2062 A A 2082
A G 2083 A U 2085 A U 2086 A G 2087 A A 2088 A C
2089 A A 2090 A C 2091 A U 2092 A G 2093 A A 2094
A A 2095 A C 2096 A A 2097 A U 2099 A U 2185 A G
2186 A U 2187 A U 2188 A U 2189 A G 2190 A A 2225
A C 2226 A A 2227 A G 2228 A U 2229 A G 2230 A U
2231 A C 2232 A U 2233 A C 2442 A C 2443 A G 2505
A C 2512 A G 2576 A A 2577 A G 2578 A C 2579 A U
2609 A C 2610 A C 2611 A C 2612 A U 2613 A MG
2928 A MG 2966 A MG 2981 A
25 1.34 1.36 16.4 0.78 -0.06 7.0 99 1 1 2 5 0 0 0  
26 1.75 1.75 19.0 1.57 0.18 3.3 92 0 1 2 7 0 0 0  
27 1.74 1.74 34.0 1.43 0.11 2.8 90 0 1 2 10 1 0 0  
28 1.57 1.57 18.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 2133 A A 2134 A A 2135 A G 2157 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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