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PDBsum entry 3ofc
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Tunnel analysis for: 3ofc calculated with  MOLE 2.0
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PDB id
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3ofc
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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0 tunnels,
coloured by tunnel radius |
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22 tunnels,
coloured by
tunnel radius
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22 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.61 |
1.61 |
70.1 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A G
830 A A 945 A C 946 A A 947 A C 964 A A 2030 A C
2066 A G 2246 A A 2247 A C 2248 A U 2249 A G 2252
A G 2253 A C 2254 A A 2426 A A 2435 A G 2436 A G
2446 A G 2447 A A 2448 A U 2449 A C 2498 A C 2501
A G 2502 A MG 2968 A MG 3007 A
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2 |
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1.61 |
1.61 |
71.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A A
821 A G 822 A G 836 A C 837 A C 922 A G 923 A C
935 A A 936 A A 945 A C 946 A A 947 A C 964 A C
965 A G 966 A U 967 A C 968 A A 2030 A G 2269 A A
2270 A G 2355 A U 2356 A G 2446 A G 2447 A A 2448
A U 2449 A C 2498 A C 2501 A G 2502 A MG 2931 A
MG 3007 A
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3 |
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1.60 |
1.60 |
76.7 |
-0.41 |
-0.80 |
3.3 |
107 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A C
823 A U 824 A A 825 A A 829 A A 945 A C 946 A A
947 A C 964 A C 965 A A 2030 A C 2248 A U 2249 A
G 2255 A G 2256 A U 2257 A U 2259 A A 2274 A C
2275 A G 2446 A G 2447 A A 2448 A U 2449 A C 2498
A C 2501 A G 2502 A MG 2933 A MG 3007 A
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4 |
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1.61 |
1.61 |
82.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A C
823 A U 824 A A 825 A U 827 A U 828 A A 829 A A
945 A C 946 A A 947 A C 964 A C 965 A A 2030 A G
2246 A C 2248 A U 2249 A C 2258 A U 2259 A A 2274
A C 2424 A A 2425 A A 2426 A C 2427 A A 2430 A U
2431 A A 2433 A A 2434 A G 2446 A G 2447 A A 2448
A U 2449 A C 2498 A C 2501 A G 2502 A MG 2933 A
MG 3007 A
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5 |
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1.23 |
1.23 |
83.4 |
-1.02 |
-0.64 |
11.2 |
84 |
5 |
0 |
2 |
1 |
0 |
0 |
0 |
C 461 A A 470 A A 471 A A 472 A A 508 A C 531 A U
562 A A 563 A C 564 A C 565 A A 572 A U 573 A A
574 A U 576 A G 577 A G 578 A G 579 A U 1255 A G
1256 A G 1259 A A 2015 A U 2016 A U 2017 A G 2018
A C 2055 A G 2057 A A 2058 A MG 2917 A MG 2918 A
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6 |
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1.65 |
1.65 |
101.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A A
945 A C 946 A A 947 A C 948 A G 949 A G 950 A C
951 A G 953 A A 960 A C 961 A U 963 A C 964 A C
965 A A 979 A A 1001 A G 1002 A G 1003 A G 1025 A
A 1134 A C 1145 A C 1146 A A 1147 A U 1148 A G
2029 A A 2030 A G 2446 A G 2447 A A 2448 A U 2449
A C 2498 A C 2501 A G 2502 A MG 3007 A MG 3021 A
G 84 B G 85 B G 86 B U 87 B C 88 B U 89 B
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7 |
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1.59 |
1.59 |
105.7 |
-0.52 |
-0.73 |
4.4 |
70 |
1 |
1 |
0 |
0 |
1 |
0 |
0 |
U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A A
945 A C 946 A A 947 A C 948 A G 949 A G 950 A C
951 A G 953 A U 958 A A 959 A A 960 A C 961 A U
963 A C 964 A C 965 A A 2030 A G 2446 A G 2447 A
A 2448 A U 2449 A U 2457 A G 2458 A A 2459 A U
2460 A A 2461 A G 2484 A G 2485 A C 2486 A G 2487
A C 2498 A C 2501 A G 2502 A MG 3007 A C 88 B U
89 B
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8 |
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1.25 |
1.25 |
109.4 |
-1.25 |
-0.73 |
12.9 |
85 |
5 |
0 |
1 |
0 |
0 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A U 576 A G 577 A G 578 A G 579 A U
1255 A G 1256 A A 2015 A U 2016 A U 2017 A G 2018
A C 2055 A G 2057 A A 2058 A A 2059 A A 2062 A A
2451 A C 2452 A G 2505 A U 2506 A C 2507 A C 2573
A G 2583 A U 2584 A U 2585 A A 2602 A U 2609 A C
2610 A MG 2917 A CLM 9000 A
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9 |
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1.61 |
1.61 |
112.8 |
-0.52 |
-0.75 |
4.6 |
96 |
1 |
0 |
1 |
1 |
0 |
0 |
0 |
U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A C
823 A U 824 A A 825 A A 829 A G 859 A C 867 A U
868 A G 869 A U 913 A G 914 A A 945 A C 946 A A
947 A C 964 A C 965 A A 2030 A U 2249 A U 2259 A
C 2263 A C 2264 A A 2270 A G 2271 A U 2272 A A
2273 A A 2274 A U 2321 A A 2322 A A 2328 A U 2329
A G 2330 A G 2331 A G 2446 A G 2447 A A 2448 A U
2449 A C 2498 A C 2501 A G 2502 A MG 2933 A MG
3007 A
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10 |
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1.58 |
1.58 |
113.4 |
-0.72 |
-0.76 |
7.6 |
85 |
4 |
1 |
0 |
1 |
0 |
0 |
0 |
U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A C
823 A U 824 A A 825 A A 829 A A 945 A C 946 A A
947 A C 964 A C 965 A A 2030 A U 2249 A U 2259 A
C 2260 A A 2274 A C 2283 A A 2284 A G 2360 A G
2361 A C 2362 A G 2363 A U 2384 A G 2389 A U 2390
A G 2421 A C 2422 A G 2428 A G 2446 A G 2447 A A
2448 A U 2449 A C 2498 A C 2501 A G 2502 A MG
2933 A MG 3007 A
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11 |
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1.30 |
1.30 |
114.0 |
-0.76 |
-0.81 |
4.1 |
92 |
1 |
0 |
3 |
0 |
0 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A C 961 A A 979 A A 1001 A G 1002 A G
1003 A G 1025 A A 1129 A U 1130 A A 1134 A C 1145
A C 1146 A A 1147 A U 1148 A G 2018 A A 2019 A A
2020 A U 2022 A G 2024 A C 2025 A G 2027 A U 2028
A G 2029 A G 2032 A A 2033 A U 2034 A G 2035 A G
2053 A A 2054 A G 2455 A C 2456 A U 2457 A G 2490
A C 2616 A U 2617 A MG 2917 A MG 2961 A MG 3021 A
G 84 B G 85 B G 86 B U 87 B C 88 B
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12 |
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1.26 |
1.26 |
116.2 |
-1.00 |
-0.77 |
6.8 |
78 |
3 |
0 |
2 |
0 |
0 |
1 |
0 |
U 3 A U 4 A A 5 A C 531 A U 562 A A 563 A C 564 A
C 565 A A 572 A U 573 A A 574 A G 2018 A A 2019 A
A 2020 A U 2022 A C 2023 A U 2034 A G 2035 A A
2042 A C 2043 A C 2044 A C 2045 A A 2054 A U 2615
A C 2616 A U 2617 A G 2618 A C 2619 A C 2620 A U
2622 A G 2623 A G 2624 A G 2627 A C 2628 A U 2629
A G 2630 A A 2632 A G 2633 A A 2634 A A 2635 A G
2775 A A 2776 A G 2777 A A 2778 A G 2782 A U 2783
A U 2784 A C 2785 A U 2786 A C 2787 A C 2827 A MG
2917 A
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13 |
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1.29 |
1.29 |
119.7 |
-1.17 |
-0.73 |
12.1 |
85 |
5 |
0 |
1 |
0 |
0 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A U 576 A G 577 A G 578 A G 579 A U
1255 A G 1256 A A 2015 A U 2016 A U 2017 A G 2018
A C 2055 A G 2057 A A 2058 A A 2059 A A 2062 A C
2063 A C 2064 A C 2065 A G 2253 A C 2254 A G 2255
A G 2437 A U 2438 A A 2439 A U 2441 A C 2442 A A
2503 A U 2586 A C 2594 A A 2600 A C 2601 A U 2609
A MG 2917 A
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14 |
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1.31 |
1.31 |
121.2 |
-0.97 |
-0.78 |
6.9 |
86 |
2 |
3 |
4 |
0 |
1 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A G 1022 A U 1023 A G 1026 A A 1127 A
G 1128 A A 1129 A U 1130 A A 1133 A A 1134 A G
2018 A A 2019 A A 2020 A U 2022 A G 2024 A C 2025
A G 2027 A G 2032 A A 2033 A U 2034 A G 2035 A G
2053 A A 2054 A G 2455 A G 2490 A A 2541 A C 2616
A U 2617 A U 2739 A A 2740 A A 2741 A A 2758 A G
2759 A C 2760 A MG 2917 A MG 2961 A
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15 |
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1.26 |
1.26 |
120.4 |
-1.13 |
-0.70 |
10.5 |
84 |
6 |
0 |
2 |
2 |
0 |
1 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A G 2018 A A 2019 A A 2020 A U 2022 A
C 2023 A U 2034 A G 2035 A A 2042 A C 2043 A C
2044 A C 2045 A A 2054 A U 2615 A C 2616 A U 2617
A G 2618 A C 2619 A C 2620 A U 2622 A G 2623 A G
2624 A A 2634 A A 2635 A C 2636 A U 2637 A G 2638
A G 2770 A C 2771 A C 2772 A C 2774 A G 2775 A A
2776 A G 2777 A A 2778 A C 2827 A MG 2917 A
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16 |
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1.58 |
1.58 |
131.8 |
-0.74 |
-0.76 |
7.8 |
75 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
U 567 A U 568 A U 569 A G 570 A U 571 A A 575 A A
945 A C 946 A A 947 A C 948 A G 949 A G 950 A C
951 A G 953 A A 960 A C 961 A U 963 A C 964 A C
965 A A 1028 A A 1029 A G 1031 A A 1032 A U 1033
A G 1115 A G 1116 A C 1117 A U 1119 A G 1120 A G
1122 A A 2030 A G 2446 A G 2447 A A 2448 A U 2449
A U 2457 A G 2458 A G 2487 A G 2488 A C 2498 A C
2501 A G 2502 A MG 3007 A U 87 B C 88 B U 89 B
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17 |
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1.28 |
1.28 |
141.7 |
-1.05 |
-0.78 |
8.9 |
83 |
4 |
2 |
3 |
0 |
0 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A G 1026 A A 1027 A A 1028 A A 1029 A
G 1031 A A 1032 A G 1116 A C 1117 A U 1119 A G
1120 A G 1122 A A 1129 A U 1130 A A 1134 A G 2018
A A 2019 A A 2020 A U 2022 A G 2024 A C 2025 A G
2027 A U 2028 A G 2032 A A 2033 A U 2034 A G 2035
A G 2053 A A 2054 A G 2455 A C 2456 A U 2457 A G
2458 A G 2487 A G 2488 A G 2490 A C 2616 A U 2617
A MG 2917 A MG 2961 A U 87 B C 88 B U 89 B
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18 |
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1.31 |
1.31 |
148.9 |
-1.04 |
-0.75 |
10.5 |
85 |
5 |
0 |
1 |
0 |
0 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A U 576 A G 577 A G 578 A G 579 A U
741 A U 1255 A G 1256 A A 1672 A G 1673 A C 1675
A A 1690 A C 1691 A U 1765 A G 1766 A G 1767 A C
1768 A U 1769 A A 1977 A A 1978 A U 1979 A G 1980
A A 1981 A U 1982 A G 1983 A A 2015 A U 2016 A U
2017 A G 2018 A C 2055 A G 2057 A A 2058 A A 2059
A G 2582 A U 2584 A U 2586 A G 2607 A G 2608 A U
2609 A C 2610 A MG 2917 A
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19 |
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1.26 |
1.26 |
155.9 |
-0.97 |
-0.70 |
7.3 |
82 |
4 |
2 |
6 |
2 |
1 |
1 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A A 905 A U 906 A G 907 A G 1026 A A
1027 A A 1028 A A 1029 A A 1129 A U 1130 A A 1134
A G 2018 A A 2019 A A 2020 A U 2022 A G 2024 A C
2025 A G 2027 A U 2028 A G 2032 A A 2033 A U 2034
A G 2035 A G 2053 A A 2054 A G 2455 A C 2456 A U
2457 A G 2458 A G 2487 A G 2488 A G 2490 A C 2616
A U 2617 A MG 2917 A MG 2961 A U 77 B A 78 B U 87
B C 88 B U 89 B C 91 B C 92 B A 101 B G 102 B U
103 B
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20 |
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1.31 |
1.31 |
154.7 |
-0.95 |
-0.76 |
9.5 |
84 |
5 |
1 |
1 |
0 |
0 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A U 576 A G 577 A G 578 A G 579 A A
735 A A 739 A A 742 A G 745 A U 746 A A 751 A A
752 A A 753 A U 754 A U 755 A A 756 A G 757 A C
758 A U 1255 A G 1256 A A 1274 A C 1298 A G 1299
A A 1302 A U 1636 A A 1637 A A 1678 A A 1679 A U
1680 A G 1681 A A 1755 A A 1759 A C 1761 A U 1781
A U 1782 A A 1783 A A 2015 A U 2016 A U 2017 A G
2018 A C 2055 A G 2057 A A 2058 A U 2609 A C 2712
A C 2716 A MG 2917 A MG 2922 A MG 2954 A
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21 |
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1.31 |
1.31 |
155.6 |
-1.01 |
-0.70 |
10.0 |
80 |
7 |
0 |
2 |
0 |
1 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A U 576 A G 577 A G 578 A G 579 A A
676 A A 677 A C 678 A C 679 A C 680 A G 681 A G
682 A A 751 A G 775 A G 776 A G 777 A A 789 A U
790 A A 794 A C 795 A C 796 A U 1255 A G 1256 A A
1808 A A 2015 A U 2016 A U 2017 A G 2018 A C 2055
A G 2057 A A 2058 A A 2080 A U 2081 A A 2082 A G
2083 A U 2231 A C 2232 A U 2233 A G 2234 A G 2235
A U 2236 A G 2237 A U 2240 A MG 2917 A MG 2927 A
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22 |
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1.36 |
1.36 |
186.2 |
-0.97 |
-0.72 |
9.6 |
80 |
6 |
0 |
2 |
0 |
1 |
0 |
0 |
C 531 A U 562 A A 563 A C 564 A C 565 A A 572 A U
573 A A 574 A U 576 A G 577 A G 578 A G 579 A A
676 A A 677 A C 678 A C 679 A C 680 A G 681 A G
682 A A 751 A G 775 A G 776 A G 777 A A 789 A U
790 A A 794 A C 795 A C 796 A U 1255 A G 1256 A C
1363 A A 1801 A A 1803 A C 1804 A A 1805 A C 1806
A G 1807 A A 1808 A A 1810 A A 2015 A U 2016 A U
2017 A G 2018 A C 2055 A G 2057 A A 2058 A A 2082
A G 2083 A C 2084 A A 2198 A A 2199 A G 2201 A U
2202 A G 2216 A G 2217 A G 2218 A U 2219 A U 2220
A G 2228 A U 2229 A MG 2917 A MG 2927 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program