PDBsum entry 3nui

Tunnel analysis for: 3nui calculated with

MOLE 2.0

PDB id

3nui

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.74

41.2

-1.02

-0.28

11.3

84

5

2

5

7

2

2

0

2

1.23

1.74

44.9

-1.18

-0.22

11.3

86

4

2

6

6

4

1

0

3

1.21

1.74

52.1

-0.83

-0.29

10.8

83

4

1

5

5

4

2

0

4

1.21

1.73

57.3

-1.24

-0.46

15.2

87

5

3

7

5

2

2

0

5

1.37

1.52

17.8

1.15

0.22

4.2

90

1

0

0

4

1

0

0

6

1.51

2.00

15.4

-2.26

-0.17

26.3

79

3

2

0

2

1

1

0

7

1.14

1.49

21.4

1.21

0.12

4.8

87

1

1

0

7

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.