PDBsum entry 3nqd Go to PDB code:  Tunnel analysis for: 3nqd calculated with MOLE 2.0 PDB id 3nqd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 1.70 59.5 -1.12 -0.27 18.6 79 6 7 1 6 3 4 0  BMP 301 A BMP 301 B 2 1.33 1.65 59.9 -1.11 -0.28 18.4 79 6 7 1 6 3 4 0  BMP 301 A BMP 301 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.