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PDBsum entry 3nid
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Pore analysis for: 3nid calculated with  MOLE 2.0
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PDB id
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3nid
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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18 pores,
coloured by radius |
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19 pores,
coloured by radius
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19 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.81 |
3.89 |
25.9 |
-0.65 |
-0.30 |
9.3 |
81 |
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0 |
3 |
3 |
2 |
0 |
2 |
0 |
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2 |
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1.68 |
1.68 |
51.4 |
-1.29 |
-0.24 |
8.4 |
86 |
3 |
1 |
5 |
3 |
4 |
0 |
0 |
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3 |
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1.40 |
1.65 |
53.6 |
-1.66 |
-0.38 |
23.1 |
81 |
6 |
3 |
4 |
6 |
2 |
0 |
0 |
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4 |
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1.53 |
1.63 |
60.5 |
-1.08 |
-0.19 |
14.2 |
80 |
4 |
3 |
6 |
6 |
6 |
0 |
0 |
GOL 459 A GOL 462 A
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5 |
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1.94 |
2.91 |
62.8 |
-1.50 |
-0.36 |
17.4 |
79 |
4 |
6 |
4 |
3 |
2 |
2 |
0 |
GOL 472 B
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6 |
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1.90 |
3.39 |
67.1 |
-1.32 |
-0.30 |
24.1 |
84 |
7 |
5 |
4 |
3 |
1 |
0 |
0 |
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7 |
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1.45 |
1.65 |
67.6 |
-1.54 |
-0.23 |
15.8 |
83 |
7 |
2 |
8 |
6 |
5 |
0 |
0 |
GOL 459 A GOL 462 A
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8 |
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1.54 |
1.64 |
81.4 |
-1.31 |
-0.36 |
19.7 |
84 |
7 |
5 |
5 |
5 |
1 |
1 |
0 |
SO4 472 D
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9 |
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1.56 |
1.66 |
94.4 |
-1.85 |
-0.39 |
19.7 |
81 |
9 |
5 |
10 |
6 |
5 |
0 |
0 |
NAG 1 G NAG 2 G MAN 3 G MAN 4 G MAN 5 G
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10 |
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1.38 |
1.61 |
100.5 |
-2.17 |
-0.43 |
21.4 |
84 |
11 |
4 |
11 |
6 |
4 |
0 |
0 |
NAG 1 G NAG 2 G MAN 3 G MAN 4 G MAN 5 G
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11 |
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2.57 |
2.63 |
103.0 |
-1.43 |
-0.36 |
19.8 |
76 |
6 |
8 |
4 |
4 |
1 |
5 |
0 |
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12 |
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1.36 |
1.60 |
104.9 |
-1.49 |
-0.38 |
19.7 |
85 |
11 |
4 |
9 |
9 |
1 |
1 |
0 |
SO4 472 D
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13 |
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1.68 |
1.68 |
104.9 |
-1.20 |
-0.41 |
11.0 |
83 |
1 |
3 |
6 |
4 |
6 |
0 |
0 |
GOL 459 C NAG 1 G NAG 2 G MAN 3 G MAN 4 G MAN 5 G
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14 |
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1.77 |
1.91 |
109.5 |
-1.18 |
-0.27 |
14.7 |
84 |
8 |
4 |
11 |
9 |
5 |
1 |
0 |
GOL 459 A GOL 462 A SO4 472 D
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15 |
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1.81 |
2.05 |
143.3 |
-1.72 |
-0.40 |
18.5 |
84 |
13 |
6 |
15 |
8 |
4 |
1 |
0 |
SO4 472 D NAG 1 G NAG 2 G MAN 3 G MAN 4 G MAN 5 G
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16 |
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1.70 |
1.72 |
152.1 |
-1.35 |
-0.40 |
14.1 |
84 |
6 |
6 |
14 |
6 |
8 |
0 |
0 |
GOL 459 C NAG 1 G NAG 2 G MAN 3 G MAN 4 G MAN 5 G
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17 |
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1.40 |
1.60 |
158.3 |
-1.64 |
-0.43 |
15.6 |
86 |
8 |
5 |
15 |
6 |
7 |
0 |
0 |
GOL 459 C NAG 1 G NAG 2 G MAN 3 G MAN 4 G MAN 5 G
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18 |
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1.67 |
1.69 |
176.2 |
-1.29 |
-0.35 |
11.8 |
86 |
4 |
4 |
14 |
7 |
5 |
2 |
0 |
GOL 459 C SO4 472 D NAG 2 G MAN 3 G MAN 4 G MAN 5
G NAG 1 J NAG 2 J MAN 3 J
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19 |
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1.88 |
1.89 |
181.3 |
-1.36 |
-0.25 |
16.4 |
80 |
10 |
7 |
11 |
9 |
7 |
2 |
0 |
GOL 459 C SO4 472 D NAG 1 J NAG 2 J MAN 3 J
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program