PDBsum entry 3nid Go to PDB code:  Tunnel analysis for: 3nid calculated with MOLE 2.0 PDB id 3nid Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.42 15.0 0.95 0.27 7.3 92 1 0 1 6 0 1 0   2 1.68 1.84 15.4 -0.23 -0.25 2.8 62 0 0 3 1 1 0 3   3 1.13 2.91 33.1 -2.26 -0.39 29.4 73 4 3 1 2 1 2 0   4 1.79 2.11 18.5 0.17 0.10 5.8 79 2 1 1 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.