PDBsum entry 3nfi

Pore analysis for: 3nfi calculated with

MOLE 2.0

PDB id

3nfi

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 pores, coloured by radius

9 pores, coloured by radius

9 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.96

2.55

45.8

-2.27

-0.61

29.9

84

6

4

5

3

0

0

0

2

1.96

2.54

56.6

-2.34

-0.53

26.3

85

7

3

6

4

0

1

0

3

2.83

2.83

61.2

-2.86

-0.63

31.4

87

8

4

6

2

0

1

0

4

1.57

1.57

69.2

-2.36

-0.67

26.4

83

6

6

5

3

1

1

0

5

1.69

1.76

73.6

-1.92

-0.48

23.8

78

7

6

3

3

3

2

0

6

1.98

2.54

76.8

-1.09

-0.37

17.9

84

7

4

6

6

1

1

0

7

1.69

1.76

86.2

-2.13

-0.58

25.4

81

7

8

6

2

2

1

0

8

2.15

2.13

90.0

-1.39

-0.24

19.8

83

9

4

5

6

1

2

0

9

1.38

2.79

121.6

-2.14

-0.43

25.5

82

14

6

8

5

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.