PDBsum entry 3n6d Go to PDB code:  Pore analysis for: 3n6d calculated with MOLE 2.0 PDB id 3n6d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.97 1.98 37.7 -0.25 0.21 9.5 76 2 2 4 6 4 0 1  HEM 500 B XFN 800 B 2 1.73 1.86 46.7 -1.77 -0.57 14.5 82 4 2 8 2 0 3 0   3 1.72 1.85 70.2 -1.71 -0.38 18.3 73 6 3 4 4 2 4 0  XFN 800 A 4 1.43 1.54 76.7 -0.99 -0.08 11.5 80 5 5 10 6 5 2 1  H4B 600 B XFN 800 B 5 1.48 1.53 80.8 -0.61 -0.15 10.2 79 3 4 8 8 4 3 2  HEM 500 B H4B 600 B XFN 800 B 6 1.16 1.37 88.3 -0.02 0.13 8.8 76 4 3 7 13 8 3 1  HEM 500 A H4B 600 A XFN 800 A HEM 500 B H4B 600 B XFN 800 B 7 1.23 1.23 90.5 -0.62 0.24 10.8 76 6 4 7 12 10 1 0  H4B 600 A XFN 800 A H4B 600 B XFN 800 B 8 1.48 1.48 101.0 -1.18 -0.15 13.1 78 8 5 9 7 5 5 1  H4B 600 B XFN 800 B 9 1.42 1.53 99.0 -1.81 -0.41 21.9 78 4 4 6 5 2 2 0  XFN 800 A 10 1.48 1.48 105.0 -0.89 -0.20 11.9 77 6 4 7 9 4 6 2  HEM 500 B H4B 600 B XFN 800 B 11 1.32 1.44 104.3 -0.58 0.11 13.0 73 5 5 6 8 9 2 1  HEM 500 A H4B 600 A XFN 800 A HEM 500 B H4B 600 B XFN 800 B 12 1.45 1.46 105.5 -1.15 0.21 14.7 75 7 6 6 7 10 0 0  H4B 600 A XFN 800 A H4B 600 B XFN 800 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.