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PDBsum entry 3n5m
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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3n5m calculated with MOLE 2.0 PDB id
3n5m
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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6 tunnels, coloured by tunnel radius 19 tunnels, coloured by tunnel radius 19 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.17 1.32 47.6 -1.01 -0.33 13.6 83 5 1 5 5 4 3 0  MSE 21 D MSE 151 D MSE 154 D
2 1.19 1.34 51.3 -1.11 -0.30 14.3 79 5 2 5 3 5 3 0  MSE 21 D MSE 151 D MSE 154 D MSE 413 D
3 1.23 1.38 51.3 -1.00 -0.38 13.8 84 5 1 5 5 4 2 0  MSE 21 D MSE 151 D MSE 154 D
4 1.16 1.29 55.0 -0.94 -0.37 12.8 80 5 2 5 3 5 2 0  MSE 21 D MSE 151 D MSE 154 D MSE 413 D
5 1.18 1.35 54.7 -0.44 -0.20 10.7 78 5 3 3 5 6 2 0  MSE 151 B MSE 21 C MSE 151 C MSE 154 C
6 1.19 1.67 54.8 -0.77 -0.36 10.8 79 5 3 4 3 5 2 0  MSE 21 C MSE 151 C MSE 154 C
7 1.23 1.39 55.4 -1.17 -0.32 16.5 80 6 2 3 5 5 2 0  MSE 21 B MSE 151 B MSE 154 B
8 1.22 1.34 56.2 -0.75 -0.35 11.5 81 5 3 4 3 4 2 0  MSE 21 A MSE 151 A MSE 154 A
9 1.20 1.33 58.1 -1.04 -0.40 13.9 84 6 2 5 5 4 2 0  MSE 21 A MSE 151 A MSE 154 A
10 1.17 1.34 57.9 -0.83 -0.30 13.3 82 6 2 5 7 6 2 0  MSE 151 B MSE 21 C MSE 151 C MSE 154 C
11 1.20 1.36 58.1 -1.04 -0.39 13.4 84 6 2 6 5 5 2 0  MSE 21 C MSE 151 C MSE 154 C
12 1.18 1.35 62.4 -1.00 -0.40 13.5 81 6 2 4 5 5 2 0  MSE 21 B MSE 151 B MSE 154 B
13 1.19 1.36 61.8 -0.78 -0.32 11.8 83 6 2 5 7 5 3 0  MSE 21 A MSE 151 A MSE 154 A MSE 151 D
14 1.16 1.28 22.4 -0.10 -0.07 7.9 77 2 3 1 4 3 0 0  MSE 218 A MSE 235 A
15 1.17 1.28 33.0 0.23 0.15 6.4 77 2 2 0 7 3 0 0  MSE 218 A MSE 229 A MSE 235 A
16 1.12 1.27 20.1 -0.73 -0.21 8.9 77 1 2 2 2 2 0 0  MSE 218 B MSE 235 B
17 1.12 1.26 22.0 -0.56 -0.31 7.4 77 1 2 2 2 2 0 0  MSE 218 B MSE 235 B
18 1.27 1.27 26.1 -0.18 0.13 7.6 76 3 1 1 4 2 0 1  MSE 218 B MSE 229 B MSE 235 B
19 1.27 1.28 28.0 -0.15 -0.04 6.1 76 3 1 1 4 2 0 1  MSE 218 B MSE 229 B MSE 235 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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