PDBsum entry 3n1v Go to PDB code:  Tunnel analysis for: 3n1v calculated with MOLE 2.0 PDB id 3n1v Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.65 1.88 22.4 -1.26 -0.28 19.8 76 2 3 2 3 1 0 1   2 1.65 1.89 30.2 -2.78 -0.48 34.3 78 6 5 1 2 1 0 1   3 1.66 1.89 30.8 -2.19 -0.43 27.1 82 4 5 1 4 1 0 1   4 1.66 1.89 33.7 -1.60 -0.25 22.5 80 3 5 3 6 4 0 1   5 1.66 1.89 34.0 -2.12 -0.52 25.2 82 5 6 3 3 1 0 1   6 1.66 1.89 40.3 -1.44 -0.23 22.5 76 7 3 3 4 2 0 1  3N1 1 F PO4 355 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.