 |
PDBsum entry 3n0c
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3n0c calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3n0c
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
10 tunnels,
coloured by tunnel radius |
|
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.15 |
2.42 |
48.7 |
-0.66 |
0.09 |
15.4 |
83 |
|
8 |
1 |
3 |
8 |
6 |
0 |
0 |
|
FAD 315 A UMP 318 D
|
 |
|
2 |
 |
1.16 |
2.41 |
55.7 |
-1.32 |
-0.26 |
17.9 |
85 |
7 |
3 |
4 |
8 |
4 |
0 |
0 |
FAD 315 A FAD 305 C
|
|
3 |
 |
1.33 |
2.56 |
68.7 |
-0.76 |
0.01 |
17.4 |
88 |
8 |
3 |
5 |
12 |
4 |
0 |
0 |
FAD 315 A FAD 310 B FAD 300 D
|
|
4 |
 |
1.24 |
2.45 |
69.5 |
-0.43 |
0.16 |
14.1 |
82 |
9 |
1 |
4 |
12 |
7 |
0 |
0 |
FAD 315 A UMP 308 B FAD 305 C
|
|
5 |
 |
1.42 |
1.61 |
82.4 |
-0.04 |
0.24 |
12.1 |
88 |
11 |
1 |
6 |
12 |
5 |
0 |
0 |
FAD 315 A FAD 310 B UMP 313 C
|
|
6 |
 |
1.25 |
2.23 |
16.5 |
0.74 |
0.40 |
13.7 |
88 |
2 |
1 |
0 |
6 |
0 |
1 |
0 |
|
|
7 |
 |
1.20 |
2.53 |
20.0 |
0.99 |
0.45 |
11.2 |
88 |
2 |
2 |
0 |
6 |
0 |
1 |
0 |
|
 |
8 |
 |
1.27 |
3.91 |
18.1 |
-2.30 |
-0.48 |
35.1 |
71 |
3 |
1 |
0 |
1 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program