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PDBsum entry 3mv0

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3mv0 calculated with MOLE 2.0 PDB id
3mv0
Pores calculated on whole structure Pores calculated excluding ligands

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46 pores, coloured by radius 38 pores, coloured by radius 38 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.62 2.27 39.5 -1.14 -0.07 14.7 65 6 2 2 2 4 3 0  DMS 5003 4
2 2.43 2.71 48.4 -1.22 -0.38 14.7 86 4 2 3 8 0 2 0  
3 1.21 1.29 49.7 -0.74 0.03 8.0 73 6 0 4 3 4 1 1  MG 3003 3 DMS 5014 3 DMS 5022 3 DMS 5024 3 DMS
5029 3 DMS 5034 3 DMS 5007 4
4 1.68 2.24 54.6 -1.27 -0.20 14.4 71 6 4 3 3 4 3 0  DMS 5003 3 DMS 5031 3
5 2.21 2.49 62.0 -1.52 -0.36 20.1 83 9 5 10 5 4 2 0  DMS 5006 3 MG 3003 4 DMS 5021 4 DMS 5023 4
6 1.68 2.23 66.3 -1.57 -0.33 16.2 75 7 4 7 4 4 3 0  DMS 5003 3 DMS 5024 3 DMS 5031 3 DMS 5007 4
7 4.24 5.74 66.2 -1.98 -0.51 21.3 81 7 5 8 4 4 1 0  MG 3003 3 DMS 5006 3 DMS 5022 3 DMS 5024 3 DMS
5034 3 MG 3003 4 DMS 5007 4 DMS 5021 4 DMS 5023 4
8 2.21 2.52 72.6 -0.93 -0.28 14.0 78 9 7 6 5 6 1 0  MG 3003 3 DMS 5022 3 DMS 5024 3 DMS 5034 3 DMS
5007 4
9 2.27 2.57 73.9 -1.24 -0.29 15.0 80 11 4 8 9 3 2 0  MG 3003 3 DMS 5022 3 DMS 5024 3 DMS 5034 3 DMS
5007 4
10 1.21 1.30 77.3 -0.63 -0.09 10.3 78 6 5 9 7 7 2 1  MG 3003 3 DMS 5006 3 DMS 5014 3 DMS 5022 3 DMS
5029 3 MG 3003 4 DMS 5021 4 DMS 5023 4
11 1.21 1.31 79.5 -0.61 -0.06 11.9 76 8 7 7 6 8 2 1  MG 3003 3 DMS 5014 3 DMS 5022 3 DMS 5029 3
12 2.24 2.55 83.0 -1.24 -0.31 15.2 79 10 9 9 10 6 3 0  DMS 5006 3 MG 3003 4 DMS 5021 4 DMS 5023 4
13 1.21 1.30 86.6 -0.99 -0.14 12.9 80 9 4 9 9 4 3 1  MG 3003 3 DMS 5014 3 DMS 5022 3 DMS 5029 3
14 1.34 1.47 99.8 -2.03 -0.44 23.3 80 9 9 9 6 6 2 0  MG 3003 3 DMS 5006 3 DMS 5022 3 DMS 5024 3 MG
3003 4 DMS 5007 4 DMS 5021 4 DMS 5023 4 DMS 5028 4
15 2.77 4.69 40.5 -1.47 -0.32 19.3 88 6 2 5 6 0 2 0  
16 1.96 2.89 41.3 -1.38 -0.40 18.6 90 5 3 3 6 0 1 0  
17 2.77 4.83 43.2 -1.42 -0.40 18.5 87 5 3 3 7 0 2 0  
18 1.63 2.27 43.7 -1.10 -0.10 13.7 64 6 2 2 2 4 4 0  DMS 5003 2
19 1.96 2.87 46.6 -1.67 -0.50 18.3 88 4 3 3 6 0 1 0  
20 2.78 4.33 48.5 -1.60 -0.47 17.6 86 4 3 3 7 0 2 0  
21 2.29 2.61 57.3 -1.15 -0.31 17.0 83 7 4 8 4 4 1 0  DMS 5007 1 MG 3003 2 DMS 5022 2
22 2.29 2.60 59.5 -1.19 -0.29 17.9 81 8 3 5 4 4 1 0  DMS 5007 1 DMS 1024 2 DMS 5022 2
23 2.30 2.30 62.7 -1.35 -0.33 18.5 82 9 3 6 4 4 0 0  DMS 5019 1 DMS 5022 1
24 4.12 5.89 67.9 -1.73 -0.42 19.4 80 8 4 6 4 4 0 0  DMS 5007 1 DMS 5019 1 DMS 5022 1 DMS 1024 2 MG
3003 2 DMS 5022 2
25 1.64 2.26 68.4 -1.53 -0.36 19.1 76 8 5 5 4 4 1 0  DMS 5007 1 DMS 1024 2 DMS 5003 2
26 2.30 2.29 69.4 -1.10 -0.30 16.7 79 9 7 6 5 7 1 0  DMS 5007 1 DMS 1024 2 DMS 5022 2
27 2.29 2.62 71.4 -1.08 -0.32 16.2 78 8 7 5 5 6 1 0  DMS 5019 1 DMS 5022 1
28 1.67 1.86 79.8 -1.52 -0.31 17.0 76 8 4 6 5 4 3 0  DMS 5003 1 DMS 5022 1
29 2.49 2.90 25.8 -2.29 -0.51 23.8 83 4 4 4 2 0 2 1  
30 1.48 3.87 28.3 -0.92 0.13 21.6 79 4 3 3 5 3 0 0  
31 2.39 3.14 29.2 -1.91 -0.52 23.1 83 5 4 3 4 0 1 1  DMS 5016 1
32 2.49 2.90 30.3 -1.23 -0.27 17.8 81 4 4 5 3 1 2 1  
33 2.06 2.06 42.3 -1.85 -0.55 23.5 85 5 4 3 3 0 1 1  DMS 5012 1
34 1.77 1.93 46.4 -1.72 -0.48 14.3 73 3 4 5 2 2 7 1  
35 2.58 3.10 43.1 -1.28 -0.31 20.5 80 4 7 5 5 2 3 1  DMS 5018 3
36 1.92 1.93 47.4 -1.15 -0.31 18.9 83 4 6 5 4 1 2 1  DMS 1024 3
37 1.77 1.91 63.5 -1.98 -0.55 18.7 77 5 8 6 3 1 8 1  DMS 5018 3
38 1.80 1.93 86.7 -1.69 -0.44 17.6 78 6 9 7 5 3 7 1  DMS 1024 3

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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